EY662309

Overview
NameEY662309
Unique NameEY662309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3127 contig Csv1_Contig3127:72..883. Citrus sinensis Unigene version 1.0 (Csv1)
Homology
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BLAST of EY662309 vs. ExPASy Swiss-Prot
Match: EIF3A_TOBAC (Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.628e-11
Identity = 33/89 (37.08%), Postives = 45/89 (50.56%), Query Frame = 2 
Query:  113 ILGRSSDGASKPFEPPV--RTSEPGSXXXXXXXXXXXXTSG--KYIPRHLRAKMEGAGVGGQSAPPQSEERWAGGTRPE---QWGPSRR 358
            IL +S+    KP EPP   R +E G             T G  KY+P+HLR KM+GAG     APP   ++W GG++P+    W   R+
Sbjct:  857 ILRKSTAVLPKPAEPPTLGRPAELGGAAPIPAAAATAPTPGPGKYVPKHLRTKMDGAG----QAPPPETDKWGGGSKPDDRPSWRDERK 941

HSP 2 Score: 33.113 bits (74), Expect = 9.628e-11
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 1 
Query:   13 EEAERQAKLDELAEKQ 60
            EEAERQAKLDE+AEKQ
Sbjct:  824 EEAERQAKLDEIAEKQ 839
The following BLAST results are available for this feature:
BLAST of EY662309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3A_TOBAC9.628e-1137.08Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662309 ID=EY662309; Name=EY662309; organism=Citrus sinensis; type=EST; length=812bp
GAAACGTTTGCGGAAGAAGCTGAACGCCAGGCAAAATTGGATGAGCTTGC
TGAAAAACAGAGTGTTTAGACAGCGAGAGCTTGATGAAAAAGAACGACTC
AGAAAAGAAGCTATCTTGGGGAGGTCATCTGATGGGGCTTCTAAACCTTT
CGAGCCTCCTGTTCGTACATCAGAGCCTGGATCTGCTGCTCCTGCTGCAG
CTGCAGCCGCAGCTGCACCAACCTCTGGAAAATACATCCCCAGGCACCTG
CGTGCGAAAATGGAAGGTGCAGGTGTAGGTGGGCAATCAGCACCTCCTCA
ATCTGAGGAGCGGTGGGCTGGCGGTACCAGACCAGAACAATGGGGGCCCA
GCAGGCGGACTGACGGTTCCAGTCAGGCTCCACCTGAAGCTGATCGCTGG
GGCAGGCCAGATGATCGCTCAGGCCCACCCAGTGATAGGTGGCGTCCTGG
TGGGGGCTCAAGGTCATCCTCCACTTGGTCGTCATCCAGACCACCACGTT
GACCTCTCCACTTTGATCAAGGATTGCTTCTGGCTGATGCTTAAATTGGG
ATATCTTGATTTTATGCTGAAATGTCGATGGGTTTTTGTTGATACGAGCT
CAAGAGGAAACTTGGGACTTGCTAGAGTTATTTGTTATTCACTTTTTTTT
TTCCCTTTTTTTTTTAAATTTTTGGCTTTGTTTGGGAAACCCCGAGATAT
TTATTGTAGTCCGAAGCAGGCACTCGAAGATTTTTGACCCTCAAACTTGG
GTACAGTTGAATTGGCAAAAAAATCTNCTCANCGGAAACAAAAAAAAAAA
GAGCGGCCGTCT
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