EY662306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY662306 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23 Identity = 85/214 (39.72%), Postives = 107/214 (50.00%), Query Frame = 1 Query: 154 MACRLADSMFLFMGPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVPVAPPSENSADCR*PIAESYGFRQIGEPLPGNVTMMDVIDSLPKMHLRLMM*KHGSLFYYPSAPLPWG-FP*SQSPMVFASLALAWTGIG-----------AHGSLF*AMIVPQILFEKSYLKTLWEPWPFPLVYPLEPCGF 741 MA R+ADS+F F GP Q K+ S SPG+ +K LL+KG H+ RC P R I+AVA PVAPPS +SA+ R +AESYGFRQIGE LP NVT+ D++D+LPK + K G F ++SP LA AWTG AH S +V I+ ++L PLVYP EP F Sbjct: 1 MASRIADSLFAFTGPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFL---------PLVYPYEPWRF 205
BLAST of EY662306 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.840e-20 Identity = 71/208 (34.13%), Postives = 96/208 (46.15%), Query Frame = 1 Query: 154 MACRLADSMFLFMGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSENSADCR*PIAESYGFRQIGEPLPGNVTMMDVIDSLPKMHLRLMM*KHGSLFYYPSAPLPWG-FP*SQSPMVFASLALAWTGIG-----------AHGSLF*AMIVPQILFEKSYLKTLWEPWPFPLVYPLEPCGF 741 MAC LADS+ LF G +Q+P + I SPG+ L L+ K + +R + I AVA+PV P SA+ R +AE YGFRQ+GEPL +VT+ DVI+ LPK + K G F S++P LA WTG AH S +V I+ +++ PL+YP EP F Sbjct: 1 MACTLADSLLLFKGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAPVESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFM---------PLIYPYEPWRF 199 HSP 2 Score: 86.2705 bits (212), Expect = 2.750e-16 Identity = 57/127 (44.88%), Postives = 72/127 (56.69%), Query Frame = 3 Query: 477 PKNAFEIDDVKAWKSVLLSVSSFALGVPLIPK-PHGICFSCFGMDRDWGPWFFVLGHDCAPNPFRE-KLLENLVGTLAFPPCL-PFGTLRV*LPTPLCKQNFGRRK-GWHPVWKKNW-TNPFFEKKI 842 PK FEIDDVKAWKSVL+SV+S+ALG+ +I K P + + FFV+GHDCA F KL+E++VGTLAF P + P+ R K N R WHPVWK + + P K I Sbjct: 109 PKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPVWKDEFESTPLLRKAI 235
BLAST of EY662306 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.139e-20 Identity = 74/209 (35.41%), Postives = 102/209 (48.80%), Query Frame = 1 Query: 154 MACRLADSMFLFMGPHQ-RPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSENSADCR*PIAESYGFRQIGEPLPGNVTMMDVIDSLPKMHLRLMM*KHGSLFYYPSAPLPWG-FP*SQSPMVFASLALAWTGIG-----------AHGSLF*AMIVPQILFEKSYLKTLWEPWPFPLVYPLEPCGF 741 MA R+ADS+F F GP Q P + SPG+ ++ LL+KG + + I+AV VPVAPPS ++A+ R +AESYGF+QIG+ LP NVT+ D++D+LPK + K G F +++P LA AWTG AH S +V I+ ++L PLVYP EP F Sbjct: 1 MASRIADSLFAFTGPQQCLPRAPKLASARLSPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFL---------PLVYPYEPWRF 200
BLAST of EY662306 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.328e-15 Identity = 63/189 (33.33%), Postives = 95/189 (50.26%), Query Frame = 1 Query: 238 SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVA-----PPSENSADCR*PIAESYGFRQIGEPLPGNVTMMDVIDSLPKMHLRLMM*K-HGSLFYYPSAPLPWGFP*SQSPMVFASLALAWTGIG-----------AHGSLF*AMIVPQILFEKSYLKTLWEPWPFPLVYPLEPCGF 741 +S G+ +KW+ ++ + H R + +GTR +QAVAVPVA PP++N+ + +AE YGF+QIGEPLP +VTM D+I SLPK + K G++ ++ F +++P LA AWTG AH S +V I+ +++ PL+YP EP F Sbjct: 27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLK-QLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFM---------PLIYPYEPWRF 205 The following BLAST results are available for this feature:
BLAST of EY662306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY662306 ID=EY662306; Name=EY662306; organism=Citrus sinensis; type=EST; length=926bpback to top |