EY661766

Overview
NameEY661766
Unique NameEY661766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.941e-30
Identity = 76/206 (36.89%), Postives = 126/206 (61.17%), Query Frame = 3
Query:  105 STLQDTTVQTKPEQTQKQNIRR-KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQ-------HKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQK 692
            S  ++  ++ K E+ + +++   ++YV NLP+S + +++  +FA  GTV +VEI+  +   ++R FAFVTM S EEA+ A+  FD  +V GR ++V F +   +   +   SA  R T        HKLYV+NLSW + S  LR+ F+     +S+KV+++ + GRS G+GF++F++ E   +A+ +++  EL GRPLRL   GQK
Sbjct:   92 SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE-VPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.788e-26
Identity = 70/179 (39.11%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  171 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---------ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 677
            KI+V NLP+S   A +  LF   G V  VE+I  K  G++R F FVTM+S EE +AA  QF+  E+ GR +RV        P P++  ++  R         ++ +++YV NL+W V    L   FS     V +KVV++ + GRS G+GFV++++ EE   AI SLDG +L GR +R+
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.470e-25
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3
Query:  171 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 692
            K++V NLP+S   A +  LF   G V  VE+I  K  G++R F FVTM++ EE +AA  QF+  E+ GR IRV                       +   R   S+   AR     ++ +++YV NLSW V    L+E FS   N V +KVV++ + GRS G+GFV++++ +E   AI SL+G +L GR +R+   ++
Sbjct:   88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.470e-25
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 3
Query:  171 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA------------------KKFKKPRPQRSASAPAR-----ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 692
            K++V NLP+S   A +  LF   G V  VE+I  K  G++R F FVTM++ EE +AA  QF+  E+ GR IRV                       +   R   S+   AR     ++ +++YV NLSW V    L+E FS   N V +KVV++ + GRS G+GFV++++ +E   AI SL+G +L GR +R+   ++
Sbjct:   89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.219e-24
Identity = 70/185 (37.84%), Postives = 102/185 (55.14%), Query Frame = 3
Query:  171 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARE---------------TQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 677
            KI+V NL +S   A +  LF   G V  VE+I  K  G++R F FVTM+S EE +AA  QF+  E+ GR +RV        P P++  ++  RE               + +++YV NL+W V    L   FS     V +KVV++ + GRS G+GFV++++ EE   AI SLDG +L GR +R+
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG-----PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.048e-24
Identity = 64/186 (34.41%), Postives = 108/186 (58.06%), Query Frame = 3
Query:  141 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR--ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            E+ Q+     K++V NLP+      +  LF   G V   E+I ++   ++R F FVTM++ EEA+ AV  ++  +V+GR++ V  A + +  RP+R    P R  E  +++YV N+ W +    L + FS +   VS++VV++   GRS G+GFV+ A++ E   AI++LDG+ L GR +R+   +
Sbjct:  127 EEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR-RGERPER----PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.048e-24
Identity = 73/224 (32.59%), Postives = 112/224 (50.00%), Query Frame = 3
Query:  114 QDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--------PRPQRSASAPA--------RETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMY 734
            +D      P + Q  +   K++V NLP++   A++  LF   G V  VE+I  K  G++R F FVTM+S  E +AA  QF+  E+ GR +RV       K        PR    +S             + +++YV NLSW V    L   FS     V ++V+++ + GRS G+GFV++ + +E + AI SLDG +L GR +R+         +E+   RR Y
Sbjct:   73 EDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV-------SEAEARPPRRQY 289          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 62/186 (33.33%), Postives = 105/186 (56.45%), Query Frame = 3
Query:  141 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR-ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 692
            E+ Q+ +   K++V NLP+      +  LF   G V   E+I ++   ++R F FVTM++ EEA  AV  +   +++GR++ V  A     PR  R   AP   +  +++YV N+ W +    L + FS +   VS++VVF+   GRS G+GFV+ +++ E   AI++LDG+ L GR +R+   ++
Sbjct:   88 EEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAA----PRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 68/190 (35.79%), Postives = 107/190 (56.32%), Query Frame = 3
Query:  171 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAP-ARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMY 734
            K++V NL +  +   +  LF   GTV   E+I ++   ++R F FVTM+S +EA+ AV +F+  +++GR++ V  A     PR  R   AP   E   ++YV NL W V +  L + FS +   V ++VV++   GRS G+GFV+ +  +E   AIS+LDG+ L GR +R+       +V+E    RR Y
Sbjct:  151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA----PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV-------NVAEERPPRRGY 329          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.821e-20
Identity = 58/175 (33.14%), Postives = 100/175 (57.14%), Query Frame = 3
Query:  171 KIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 692
            K++V NLP+     ++  +F   G V   E+I ++   ++R F FVTM++ EEA+ AV   +  ++ GR + V   K   +  P+R+      E   ++YV NL W V ++ L + FS +   VS++VV +   GRS G+GFV+ +++ E   AI++LDG+ L GR +R+   ++
Sbjct:   56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN--KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227          
The following BLAST results are available for this feature:
BLAST of EY661766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
ROC5_NICSY1.941e-3036.8933 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY3.788e-2639.1129 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC2_NICSY5.470e-2535.8629 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL5.470e-2535.8631 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICPL1.219e-2437.8430 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY6.048e-2434.4131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH6.048e-2432.59Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC3_NICSY1.760e-2333.3328 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.760e-2335.7931 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_SPIOL1.821e-2033.1428 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661766 ID=EY661766; Name=EY661766; organism=Citrus sinensis; type=EST; length=921bp
TTCGTCGACCCACGCGTCCGTGTATAAAGCTTCCCCATTCTTCCAATTCT
ACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAAGT
ATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAACAC
AGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGTCT
TTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTTGT
AGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGCAT
TTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAATTC
GACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAGAA
ATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGAAA
CACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTACT
CATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAGGT
TGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTCAT
TTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCAAG
GAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGATGA
TGTATCAGAGAGTAACAGGAAGAGGAGGATGTATCTGAGGATCAATCTGC
AGAGTCATAGCTATTCCAATTTTTGGTGGNTTGCAGATTACAGCGCCATC
AAATCAGACACGCATTGCAGTATCGGTGAGCCAGCAGCAGCAGCGACAGT
GTCGAGTGCAACATATGCGTCGGGCCGTCCCATTGCAGGATGGCTGGGCT
GGCCCGGTGCTCGGGCAACAA
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