EY656643

Overview
NameEY656643
Unique NameEY656643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 6.429e-58
Identity = 132/265 (49.81%), Postives = 160/265 (60.38%), Query Frame = 3
Query:  123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR-PTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQRAPLLLVG--KCNPLDLFLRAFLTGVKCSWGWHLDF 908
            IFVKTL G++F++EVKP D V DVK  IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K  P+G  + ++ AP+                                                   VYG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP  G+ A +P   PQ    AP    G    NPL+LF +        +   +LDF
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPT----------SGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQA-AAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDF 255          
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 5.455e-49
Identity = 121/250 (48.40%), Postives = 142/250 (56.80%), Query Frame = 3
Query:  123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ-RAPLLLVG--KCNPLDLFLRA 863
            I VKTLKG++F +EV     V DVK  IET QG  +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K  +     TS AP+                                                    YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ ++ PV   P + Q AN PTQ  Q TQ  AP +L      +PLDLF +A
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PV--PPPSIQPAN-PTQASQATQPAAPSILSSGPNASPLDLFPQA 248          
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 7.141e-41
Identity = 96/222 (43.24%), Postives = 126/222 (56.76%), Query Frame = 3
Query:  129 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEG-STTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSP 782
            VKTLKG+ F++ V P DT+  VK  IE  QG D YP  QQ+LI+ GKVLKD+T+L ENKV E  F+V+ML+K+K     G ++  T+                         +                            YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV    P A+  G+G A  +P
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPASPIPAQEQPAAQTD-----------TYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAP 215          
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 2.078e-40
Identity = 99/243 (40.74%), Postives = 128/243 (52.67%), Query Frame = 3
Query:  129 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV-ARAPGNGQAANSPTQMPQPTQRAPLLLVGKCNPLDLF 854
            VKTLKG+ F++ V P DT+  VK  IE  Q  D YP  QQ+LI+ GKVLKD+TTL ENKV E  F+V+ML+K+K  +  G + ST PT                                                    YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE   +        G+G+   +P     P            +PLDLF
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPS-STQPTSTTTSTISSTTLAAPSTTQSIAV-----------PASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGSGRELTAPPPSGGPNS----------SPLDLF 225          
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.640e-32
Identity = 74/104 (71.15%), Postives = 79/104 (75.96%), Query Frame = 3
Query:  546 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSPTQMPQPTQRAPLLLVGKCNPLDLF 854
            VYG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN P Q  QP   A        NPLDLF
Sbjct:  173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQTQQPA--AAPASGPNANPLDLF 274          

HSP 2 Score: 127.102 bits (318), Expect = 1.397e-28
Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 3
Query:  123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTK 395
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K  +   S+ S   ++
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASSASAGTSQ 93          
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.726e-24
Identity = 81/254 (31.89%), Postives = 115/254 (45.28%), Query Frame = 3
Query:  123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI-----PEQAEVQ--PVARAPGNGQAANSPTQ----------MPQPTQRAPLLL 824
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G  +    +PT                                                  G  G    AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GI     PE   VQ   V+  P    A  +P +          M Q  Q+ P LL
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALL 255          
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.353e-23
Identity = 82/254 (32.28%), Postives = 114/254 (44.88%), Query Frame = 3
Query:  123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI-----PEQAEVQPVARA--PGNGQAANSPTQ----------MPQPTQRAPLLL 824
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + +  + E +FVV+M+TK K   G  +    +PT                                                  G  G    AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GI     PE   VQ   RA  P    A  +P +          M Q  Q+ P LL
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYHIDEKNFVVVMVTKAKAGQGISAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQRAEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALL 255          
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.308e-23
Identity = 69/206 (33.50%), Postives = 99/206 (48.06%), Query Frame = 3
Query:  123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 731
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G    +  +PT                                                  G  G    AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GIP   E
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE 207          
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.791e-15
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 3
Query:  123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTS 380
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T     T+
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSAVPATT 88          
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 359
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
The following BLAST results are available for this feature:
BLAST of EY656643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23D_ARATH6.429e-5849.81Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ5.455e-4948.40Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH7.141e-4143.24Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH2.078e-4040.74Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23C_ARATH4.640e-3271.15Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23A_HUMAN2.726e-2431.89UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23A_MOUSE1.353e-2332.28UV excision repair protein RAD23 homolog A OS=Mus ... [more]
RD23A_BOVIN2.308e-2333.50UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RD23B_RAT8.791e-1545.35UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE1.148e-1448.10UV excision repair protein RAD23 homolog B OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656643 ID=EY656643; Name=EY656643; organism=Citrus sinensis; type=EST; length=919bp
TCCTCGACCCACGCGTCCGATTATAGATATACCTTGAAAAGACCTTGCGG
ATCGGAAAACCAAATAAAATAGTTGAATTCGAGAGACCCAACGGAACGTA
GAAAAAGAAGAAGATGATGAAGATTTTCGTTAAAACTCTCAAAGGAACTT
CTTTCGACGTCGAAGTGAAACCTGAAGACACGGTCTTTGATGTGAAAATG
AAGATAGAAACTGTTCAAGGATCGGATGTTTATCCTGCTGCACAACAGAT
GCTGATTTATCAGGGGAAAGTCCTCAAAGATGATACTACACTGGAAGAGA
ACAAAGTAGCTGAAAATAGTTTTGTTGTTATTATGTTAACAAAGAATAAG
AGACCAACTGGTGAAGGTTCAACTACGTCAACTGCGCCTACAAAGGCTCC
CCAGTCAAGTGCCCCAACCCCTGCAGTGACCCCAGCAACAGCTCCTCAGA
CTGCCGTGCCAATCTCTACAGAGCCTACACCTGCTCCTACTCCTGCTCCT
GCTTCTGCTTCTGTGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTA
TGGGCATGCTGCATCTAATCTGGTTGCTGGGAACAACTTGGAGGGAGCAA
TCCAGCAGATTCTTGATATGGGTGGAGGGACTTGGGATAGAGATACTGTT
GTTCGTGCTCTTCGAGCTGCTTATAATAATCCTGAGAGGGCTGTTGAATA
TTTATATTCTGGTATACCTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCG
CCCCTGGTAATGGACAAGCTGCTAACTCTCCAACTCAGATGCCACAGCCA
ACCCAACGGGCACCGTTACTTCTAGTGGGCAAATGCAATCCTTTGGACCT
CTTCCTCAGGGCCTTCCTGACGGGGGTTAAGTGCAGCTGGGGCTGGCATC
TTGACTTTTACGAATAGCC
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