EY656643
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 224.557 bits (571), Expect = 6.429e-58 Identity = 132/265 (49.81%), Postives = 160/265 (60.38%), Query Frame = 3 Query: 123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR-PTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQRAPLLLVG--KCNPLDLFLRAFLTGVKCSWGWHLDF 908 IFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K P+G + ++ AP+ VYG AASNLVAG LE +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A +P PQ AP G NPL+LF + + +LDF Sbjct: 3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPT----------SGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQA-AAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDF 255
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 194.897 bits (494), Expect = 5.455e-49 Identity = 121/250 (48.40%), Postives = 142/250 (56.80%), Query Frame = 3 Query: 123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQ-RAPLLLVG--KCNPLDLFLRA 863 I VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K + TS AP+ YG A SNLVAG+NLE IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ ++ PV P + Q AN PTQ Q TQ AP +L +PLDLF +A Sbjct: 3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PV--PPPSIQPAN-PTQASQATQPAAPSILSSGPNASPLDLFPQA 248
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 167.933 bits (424), Expect = 7.141e-41 Identity = 96/222 (43.24%), Postives = 126/222 (56.76%), Query Frame = 3 Query: 129 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEG-STTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSP 782 VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L ENKV E F+V+ML+K+K G ++ T+ + YG AAS LV+G++LE +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A +P Sbjct: 5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPASPIPAQEQPAAQTD-----------TYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAP 215
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 2.078e-40 Identity = 99/243 (40.74%), Postives = 128/243 (52.67%), Query Frame = 3 Query: 129 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPV-ARAPGNGQAANSPTQMPQPTQRAPLLLVGKCNPLDLF 854 VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL ENKV E F+V+ML+K+K + G + ST PT YG AAS LV+G+++E +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE + G+G+ +P P +PLDLF Sbjct: 5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPS-STQPTSTTTSTISSTTLAAPSTTQSIAV-----------PASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGSGRELTAPPPSGGPNS----------SPLDLF 225
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 4.640e-32 Identity = 74/104 (71.15%), Postives = 79/104 (75.96%), Query Frame = 3 Query: 546 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSPTQMPQPTQRAPLLLVGKCNPLDLF 854 VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN P Q QP A NPLDLF Sbjct: 173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQTQQPA--AAPASGPNANPLDLF 274 HSP 2 Score: 127.102 bits (318), Expect = 1.397e-28 Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 3 Query: 123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTK 395 IFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K + S+ S ++ Sbjct: 3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASSASAGTSQ 93
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.726e-24 Identity = 81/254 (31.89%), Postives = 115/254 (45.28%), Query Frame = 3 Query: 123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI-----PEQAEVQ--PVARAPGNGQAANSPTQ----------MPQPTQRAPLLL 824 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G + +PT G G AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GI PE VQ V+ P A +P + M Q Q+ P LL Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALL 255
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.353e-23 Identity = 82/254 (32.28%), Postives = 114/254 (44.88%), Query Frame = 3 Query: 123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI-----PEQAEVQPVARA--PGNGQAANSPTQ----------MPQPTQRAPLLL 824 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + + E +FVV+M+TK K G + +PT G G AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GI PE VQ RA P A +P + M Q Q+ P LL Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYHIDEKNFVVVMVTKAKAGQGISAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQRAEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALL 255
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.308e-23 Identity = 69/206 (33.50%), Postives = 99/206 (48.06%), Query Frame = 3 Query: 123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 731 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G + +PT G G AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP E Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE 207
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.791e-15 Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 3 Query: 123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTS 380 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T T+ Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSAVPATT 88
BLAST of EY656643 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 3 Query: 123 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 359 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81 The following BLAST results are available for this feature:
BLAST of EY656643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >EY656643 ID=EY656643; Name=EY656643; organism=Citrus sinensis; type=EST; length=919bpback to top |