EY673886

Overview
NameEY673886
Unique NameEY673886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.629e-28
Identity = 68/143 (47.55%), Postives = 80/143 (55.94%), Query Frame = 1
Query:  325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKE-----------------GSFF----WI*NFPGKVKSLATRE 690
            SL GDFGFDPLGL  DPESLRW  QAELVH R+AM G AGI   +LL   GI   P WY AG  E+ F  T TLFIV+L+L+G+AE +R  D I PG    +                 G +F    W    P K+K L T+E
Sbjct:   81 SLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222          

HSP 2 Score: 32.7278 bits (73), Expect = 1.629e-28
Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 2
Query:  140 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGT 229
            T R   TV  A    RP W PG  PPP+LDG+
Sbjct:   50 TARSATTVCVAADPDRPLWFPGSTPPPWLDGS 81          
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.033e-27
Identity = 64/143 (44.76%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKE-----------------GSFF----WI*NFPGKVKSLATRE 690
            SL GDFGFDPLGLG DPESL+W  QAELVH+R+AM G AGI   + L   G+   P WY AG  E+ F  T TLF+++L+L+G+AE +R  D I PG    +                 G +F    W    P K+K L T+E
Sbjct:   81 SLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222          

HSP 2 Score: 30.4166 bits (67), Expect = 1.033e-27
Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = 2
Query:  125 AKPGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGT 229
            A  G+    ++ V     RP W PG  PP +LDG+
Sbjct:   47 APVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGS 81          
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.814e-24
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSF 639
            SLAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L  ++    GI  +P WY+AG  ++ FAS+ TLF+++ +L  + E +R  D  +PGS  ++  F
Sbjct:   70 SLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 173          

HSP 2 Score: 23.483 bits (49), Expect = 2.814e-24
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  188 WLPGVDPPPYLDGT 229
            WLPG+  P YL G+
Sbjct:   57 WLPGLASPDYLTGS 70          
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.070e-24
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSF 639
            SL GD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L  ++    GI  +P WY AG  E+ FAS+ TLF+++ +L  + E +R  D  +PGS  ++  F
Sbjct:   69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF 172          

HSP 2 Score: 23.0978 bits (48), Expect = 8.070e-24
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  188 WLPGVDPPPYLDGT 229
            WLPG+  P YL G+
Sbjct:   56 WLPGLASPGYLTGS 69          
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.368e-19
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSF 639
            SL GD GFDPL L EDPE LRW+VQA++V+ R+AM GVAG+L  ++L   G+   P W      E  FAS+ T   V  +   + E +R  D  +PGS  ++  F
Sbjct:   49 SLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIF 152          

HSP 2 Score: 31.9574 bits (71), Expect = 1.368e-19
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  131 PGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGT 229
            P +TRR +A     Q + +WLPG+  P YLDG+
Sbjct:   21 PRSTRRDVAV----QAKGSWLPGLQSPAYLDGS 49          
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.146e-17
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSFFW 645
            SL GDFGFDPLGLG+DP  L+WY +AEL+H R+AM  V GI        TGI     W+EAGA     A  S  TL   QLLLMG+ E++R +D+  P SQ+ E +  W
Sbjct:   79 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAW--TGI----PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPW 181          
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.552e-17
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSFFW 645
            SL GD+GFDPLGLG+DP  L+WY +AEL+H R+AMA V GI        +GI     W+EAGA     A  S  TL   QL+LMG+ E++R +D+  P SQ+ E +  W
Sbjct:   74 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPW 176          
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.813e-16
Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSFFW 645
            SL GDFGFDPLGLG+DP  L+WY +AEL+H R+AMA V GI        +GI     W+EAGA       F F S   L   QLLLMG+ E++R +D+    SQ+ + +  W
Sbjct:   74 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPW 176          
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  328 LAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKE 630
            L GDFGFDPLGL  DPE        +W    E+++ RFAM G AG +  ++L   G+        W++ G +        +A   TLF++++ LMGFAE +R  D+  PGS  K+
Sbjct:   70 LPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ 183          
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.449e-12
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  325 SLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKE 630
            SL GD+GFDPLGL  DPE        RW    E+++ RFAM G  G +  + L   G+        W++ G +        +A   TLF++++ LMGFAE +R  D+  PGS  K+
Sbjct:   71 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ 185          
The following BLAST results are available for this feature:
BLAST of EY673886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CB12_SOLLC1.629e-2847.55Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.033e-2744.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_ARATH2.814e-2450.48Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA8.070e-2451.43Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU1.368e-1943.81Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4_SPIOL1.146e-1749.54Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC2.552e-1747.71Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC4.813e-1646.43Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB13_SOLLC6.506e-1337.39Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.449e-1237.07Chlorophyll a-b binding protein 3, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-004-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673886 ID=EY673886; Name=EY673886; organism=Citrus sinensis; type=EST; length=939bp
AGAGAAACAAAAAATGGCCGTTGCAGTTGGAAGAGGCTTCCTCCTTCAGC
CTTCCTCTTCATCGTCCTTCATTTCTAAGGACGTAAATAAATCGTCAATA
GGTATCACTAGCGCATTTCTGCCTGCCAAACCAGGAACCACTCGACGTTA
TTTGGCAACTGTGGTTCGAGCCCAGCAGCGACCAACATGGCTCCCTGGAG
TCGACCCTCCTCCCTACCTTGATGGAACGTGAGCCTTTTGTAGTACTATA
TAATATTTGGATATATCACTTCATATCTGTTTACGATGATTTGCTTGAAT
TTCAAATATTTTTTGGATTATTGAAGTTTGGCTGGAGATTTTGGATTTGA
CCCACTTGGGCTTGGAGAGGATCCGGAGAGCTTAAGGTGGTATGTGCAGG
CGGAGTTGGTGCATGCCCGTTTTGCTATGGCTGGAGTTGCTGGAATTCTT
TTCACAGATTTACTCCGCGTAACAGGGATCCGAGAGTTGCCAGTCTGGTA
TGAAGCCGGTGCAGTTGAATTCAAGTTTGCCAGCACAAGAACTTTGTTCA
TCGTGCAACTACTATTGATGGGCTTCGCTGAAACCCAAAGGGATATGGAT
TACATTAGTCCTGGATCACAAACCAAAGAGGGATCCTTCTTTTGGATTTG
AAACTTCCCTGGAAAGGTTAAAAGCCTGGCTACCCGGGAAGGTCCTCTGG
TAAAACCCCCTTGGCCGGGCTAAAAAAATCAAAAATGCCCCCGACTGGGA
AACTTAAAGAAAATTAAAAAAGGAAAAATTGGAATGGGACCTTATGCTGG
GGAATTTTTTGGGAAACTTTTGGGGAACCCTGGTGGGGTCCATTTTGAAA
AAAATTTTGGGAAACCACCCCCCCAATCACAGGGGCAAAAAACCTATTAA
ACAGAAACCCTTGGGAAAATTTGGGGGATAAAAAAATGG
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