EY673886
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.629e-28 Identity = 68/143 (47.55%), Postives = 80/143 (55.94%), Query Frame = 1 Query: 325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKE-----------------GSFF----WI*NFPGKVKSLATRE 690 SL GDFGFDPLGL DPESLRW QAELVH R+AM G AGI +LL GI P WY AG E+ F T TLFIV+L+L+G+AE +R D I PG + G +F W P K+K L T+E Sbjct: 81 SLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222 HSP 2 Score: 32.7278 bits (73), Expect = 1.629e-28 Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 2 Query: 140 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGT 229 T R TV A RP W PG PPP+LDG+ Sbjct: 50 TARSATTVCVAADPDRPLWFPGSTPPPWLDGS 81
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.033e-27 Identity = 64/143 (44.76%), Postives = 81/143 (56.64%), Query Frame = 1 Query: 325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKE-----------------GSFF----WI*NFPGKVKSLATRE 690 SL GDFGFDPLGLG DPESL+W QAELVH+R+AM G AGI + L G+ P WY AG E+ F T TLF+++L+L+G+AE +R D I PG + G +F W P K+K L T+E Sbjct: 81 SLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222 HSP 2 Score: 30.4166 bits (67), Expect = 1.033e-27 Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = 2 Query: 125 AKPGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGT 229 A G+ ++ V RP W PG PP +LDG+ Sbjct: 47 APVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGS 81
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.814e-24 Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 1 Query: 325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSF 639 SLAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L ++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R D +PGS ++ F Sbjct: 70 SLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 173 HSP 2 Score: 23.483 bits (49), Expect = 2.814e-24 Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2 Query: 188 WLPGVDPPPYLDGT 229 WLPG+ P YL G+ Sbjct: 57 WLPGLASPDYLTGS 70
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 8.070e-24 Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 1 Query: 325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSF 639 SL GD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+ TLF+++ +L + E +R D +PGS ++ F Sbjct: 69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF 172 HSP 2 Score: 23.0978 bits (48), Expect = 8.070e-24 Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2 Query: 188 WLPGVDPPPYLDGT 229 WLPG+ P YL G+ Sbjct: 56 WLPGLASPGYLTGS 69
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.368e-19 Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSF 639 SL GD GFDPL L EDPE LRW+VQA++V+ R+AM GVAG+L ++L G+ P W E FAS+ T V + + E +R D +PGS ++ F Sbjct: 49 SLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIF 152 HSP 2 Score: 31.9574 bits (71), Expect = 1.368e-19 Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2 Query: 131 PGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGT 229 P +TRR +A Q + +WLPG+ P YLDG+ Sbjct: 21 PRSTRRDVAV----QAKGSWLPGLQSPAYLDGS 49
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.146e-17 Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSFFW 645 SL GDFGFDPLGLG+DP L+WY +AEL+H R+AM V GI TGI W+EAGA A S TL QLLLMG+ E++R +D+ P SQ+ E + W Sbjct: 79 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAW--TGI----PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPW 181
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.552e-17 Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 1 Query: 325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSFFW 645 SL GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+EAGA A S TL QL+LMG+ E++R +D+ P SQ+ E + W Sbjct: 74 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPW 176
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.813e-16 Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 1 Query: 325 SLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKEGSFFW 645 SL GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+EAGA F F S L QLLLMG+ E++R +D+ SQ+ + + W Sbjct: 74 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPW 176
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13 Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 1 Query: 328 LAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKE 630 L GDFGFDPLGL DPE +W E+++ RFAM G AG + ++L G+ W++ G + +A TLF++++ LMGFAE +R D+ PGS K+ Sbjct: 70 LPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ 183
BLAST of EY673886 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.449e-12 Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 1 Query: 325 SLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETQRDMDYISPGSQTKE 630 SL GD+GFDPLGL DPE RW E+++ RFAM G G + + L G+ W++ G + +A TLF++++ LMGFAE +R D+ PGS K+ Sbjct: 71 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ 185 The following BLAST results are available for this feature:
BLAST of EY673886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY673886 ID=EY673886; Name=EY673886; organism=Citrus sinensis; type=EST; length=939bpback to top |