DY305557

Overview
NameDY305557
Unique NameDY305557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1272
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305557 vs. ExPASy Swiss-Prot
Match: NEK4_ARATH (Serine/threonine-protein kinase Nek4 OS=Arabidopsis thaliana GN=NEK4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.250e-27
Identity = 69/158 (43.67%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  218 RGLVKSMLRKNPEFRPSAAELLCHPHLQPYVLGIHLKLNGPRRNTFPLEWS--DSNFKKTRFMEPEAISIHSNREKRQSFSNDRALNPSVSETEQDSLSSTLRGRAFGNYMNQKFKELSIGVVHEELGVD-MSTTPNVCNAGKTPRLTPAKVSATPRK 682
            RGL+KSMLRKNPE RPSA ELL HPHLQPY+  +++KL  PRR+TFPL++S  D+  K+ R               R SFSNDR LNPSVS+TE  S+SS+ +      +  +K  E+++GVV EE+             A +TPR+      A+ ++
Sbjct:  232 RGLIKSMLRKNPELRPSANELLNHPHLQPYISMVYMKLESPRRSTFPLQFSERDATLKERR---------------RSSFSNDRRLNPSVSDTEAGSVSSSGKASPTPMFNGRKVSEVTVGVVREEIVPQRQEEAKKQSGAARTPRVAGTSAKASTQR 374          
BLAST of DY305557 vs. ExPASy Swiss-Prot
Match: NEK2_ORYSJ (Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. japonica GN=NEK2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.479e-25
Identity = 68/178 (38.20%), Postives = 93/178 (52.25%), Query Frame = 2
Query:  218 RGLVKSMLRKNPEFRPSAAELLCHPHLQPYVLGIHLKLNGPRRNTFPLEWS-DSNFKKTRFMEPEAISIHSNREKRQSFSNDRALNPSVSETEQDSLSSTLRGRAFGNY-MNQKFKELSIGVVHEELGVDMSTTPNVCNAG---KTPRLTPAKVSATPRKQATPSKNTHIGSKRDSLP 736
            RGL+KSMLRK+PE RPSAA+LL HP LQPYVL + LK + P RN  P+  S     KK  F      S      +R S  N+R +  S    E++S+SST   R+   Y   Q  K LS+     E G ++++   +       +TP+  PAK + T R Q  P K ++  + R  LP
Sbjct:  232 RGLIKSMLRKSPEHRPSAAQLLKHPQLQPYVLQVQLK-SSPTRNILPIHQSLTDKVKKMTFPSDVVDSARRRMARRNSLGNERTVTFSKPSPERNSVSST---RSIKEYTTTQSVKGLSVD--SSEAGDEVTSKAIITKTSSILRTPKSLPAK-TYTARNQLEPPKTSYNRTYRSELP 402          

HSP 2 Score: 43.8986 bits (102), Expect = 1.479e-25
Identity = 22/33 (66.67%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  852 PKCFVNASKIDKIANFPLASSEDPLLSIPKNLS 950
            P   VNA +ID+IA FPLASSEDPLL I   LS
Sbjct:  441 PDVSVNAPRIDRIAEFPLASSEDPLLPIHNKLS 473          
BLAST of DY305557 vs. ExPASy Swiss-Prot
Match: NEK2_ORYSI (Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. indica GN=NEK2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.479e-25
Identity = 66/177 (37.29%), Postives = 92/177 (51.98%), Query Frame = 2
Query:  218 RGLVKSMLRKNPEFRPSAAELLCHPHLQPYVLGIHLKLNGPRRNTFPLEWS-DSNFKKTRFMEPEAISIHSNREKRQSFSNDRALNPSVSETEQDSLSSTLRGRAFGNYMNQKFKELSIGVVHEELGVDMSTTPNVCNAG---KTPRLTPAKVSATPRKQATPSKNTHIGSKRDSLP 736
            RGL+KSMLRK+PE RPSAA+LL HP LQPYVL + LK + P RN  P+  S     KK  F      S      +R S  N+R +  S    E++S+SST   R+   Y   +  E  + V   E G ++++   +       +TP+  PAK + T R Q  P K ++  + R  LP
Sbjct:  232 RGLIKSMLRKSPEHRPSAAQLLKHPQLQPYVLQVQLK-SSPTRNILPIHQSLTDKVKKMTFPSDVVDSARRRMARRNSLGNERTVTFSKPSPERNSVSST---RSIKEYTTTQSVE-GLSVDSSEAGDEVTSKAIITKTSSILRTPKSLPAK-TYTARNQLEPPKTSYNRTYRSELP 402          

HSP 2 Score: 43.8986 bits (102), Expect = 1.479e-25
Identity = 22/33 (66.67%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  852 PKCFVNASKIDKIANFPLASSEDPLLSIPKNLS 950
            P   VNA +ID+IA FPLASSEDPLL I   LS
Sbjct:  441 PDVSVNAPRIDRIAEFPLASSEDPLLPIHNKLS 473          
BLAST of DY305557 vs. ExPASy Swiss-Prot
Match: NEK1_ARATH (Serine/threonine-protein kinase Nek1 OS=Arabidopsis thaliana GN=NEK1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.204e-23
Identity = 71/188 (37.77%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  218 RGLVKSMLRKNPEFRPSAAELLCHPHLQPYVLGIHLKLNGPRRNTFPLEWSDSN--FKKTRFMEPEAISIHSNREKRQSFSNDRALNPSVSETEQDSLSSTLRGRAFGNYMNQKFKELSIGVVHEELGVDMSTTPNVCNAGKTPRLTPAKVSATPRK-QATPSKNTHIGSKRDSLPFHKIQGGSPSPR 772
            RGLVKSMLRKNPE RPSA++LL HPHLQPYVL + L+LN  RR T P E   S    KK  F EP          + +S  NDRALNP   E E+D+ SS          ++++  +LSI    +   +    + + C   K P    AK S T R+   T  ++ H+         H + GG  + +
Sbjct:  232 RGLVKSMLRKNPEVRPSASDLLRHPHLQPYVLDVKLRLNNLRRKTLPPELPSSKRIMKKAHFSEPAVTCPAFGERQHRSLWNDRALNP---EAEEDTASSI-------KCISRRISDLSIESSSKGTLICKQVSSSACKVSKYPL---AKSSVTSRRIMETGRRSDHL---------HPVSGGGTTSK 397          

HSP 2 Score: 27.7202 bits (60), Expect = 2.204e-23
Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = 3
Query:  852 PKCFVNASKIDKIANFPLASSEDPLLSIPKNLSNS 956
            P+  +N  ++DKIA FPLA  E  +   P     S
Sbjct:  434 PEYSINEPQVDKIAIFPLAPYEQDIFFTPMQRKTS 468          
BLAST of DY305557 vs. ExPASy Swiss-Prot
Match: NEK1_ORYSJ (Serine/threonine-protein kinase Nek1 OS=Oryza sativa subsp. japonica GN=NEK1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.868e-19
Identity = 75/200 (37.50%), Postives = 100/200 (50.00%), Query Frame = 2
Query:  137 DLQAFISYITWXXXXXXXXXXXXCVYSRGLVKSMLRKNPEFRPSAAELLCHPHLQPYVLGIHLKLNGPRRNTFPLEWSDSNFKKTRFMEPEAISIHSNREKRQSFSNDRALNPSVSETEQDSLSSTLRGRAFGNYMNQKFKELSIGV-VHEELGVDMSTTPNVCNAGKTPRLTPAKVSATPRKQATPSKNTHIGSKRDSL 733
            D+QA IS IT                 RGL+KSMLRK+PE RPSAAELL HPHLQPYVL +HLK + P RN  P     S   K + M     S+  ++ +R S  N+R +  S    E+   SS    + +     +  K+LSI V + EE+    + T    +  KTP+ TP+K   TP  Q  P K ++    R  L
Sbjct:  207 DMQALISKITKSIVSPLPTRYSGAF--RGLIKSMLRKSPEHRPSAAELLKHPHLQPYVLQVHLK-SSPARNIIPSH--QSPIDKVKKMTFPTESMCRSKGRRNSLGNERIVTFSKPSPERKFTSSIQSIKDYST--TRSVKDLSIDVSLVEEVSSKTTFTTRTSSIVKTPKRTPSKTITTP--QLEPPKVSYNRVNRSEL 397          
BLAST of DY305557 vs. ExPASy Swiss-Prot
Match: NEK3_ORYSJ (Serine/threonine-protein kinase Nek3 OS=Oryza sativa subsp. japonica GN=NEK3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.284e-17
Identity = 65/164 (39.63%), Postives = 87/164 (53.05%), Query Frame = 2
Query:  218 RGLVKSMLRKNPEFRPSAAELLCHPHLQPYVLGIHLKLNGPRRNTFPLEWSDSNFKKTRFMEPEAISIHSNREKRQSFSNDRALNPSVSETEQDSLSSTLRGRAFGNYMNQKFKELSIGVVHEELGVDMSTTPNVCNAGKTPRLTPAKVSATPRKQATPSKNTH 709
            RGL+KSMLRK+P+ RPSAAELL HPHLQP+VL + LK + P RN FP    D+N  K    + E  +  +   K  SF  DR +            SST   + +   + Q   EL +G + E++ VD     N     K+P  TP + S+TPR +  PSK  H
Sbjct:  232 RGLIKSMLRKSPDHRPSAAELLKHPHLQPFVLELQLK-SSPARNLFP----DTN--KASCSDDEN-NWKAKYSKSHSFKVDRIVKVDKVAANNGHPSSTGTAKDYQELLKQPMDEL-LGQLTEKV-VDEVIHGNHSRVTKSPAPTPRRASSTPRIRLEPSKTFH 385          
BLAST of DY305557 vs. ExPASy Swiss-Prot
Match: NEK2_ARATH (Serine/threonine-protein kinase Nek2 OS=Arabidopsis thaliana GN=NEK2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.137e-15
Identity = 58/161 (36.02%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  218 RGLVKSMLRKNPEFRPSAAELLCHPHLQPYVLGIHLKLNGPRRNTFPLEWSDS-NFKKTRFMEPEAISIHSNREKRQSFSNDRALNPS-VSETEQDSLSSTLRGRAFGNYMNQKFKELSIGVVHEELGVDMSTTPNVCNAGKTPRLTPAKVSATPRKQATP 694
            RGLVKSMLRKNPE RPSAAELL  P LQPY+  IHLK+N P  N  P +W +S + ++  F E          ++R+      +  PS      +DS+SS    +    Y+N   +E  + +  +  G D +       A K+ R  P + SA+P +   P
Sbjct:  232 RGLVKSMLRKNPELRPSAAELLRQPLLQPYIQKIHLKVNDPGSNVLPAQWPESESARRNSFPE----------QRRRPAGKSHSFGPSRFRGNLEDSVSSI--KKTVPAYLN---RERQVDLSTDASG-DGTVVRRTSEASKSSRYVPVRASASPVRPRQP 376          
The following BLAST results are available for this feature:
BLAST of DY305557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NEK4_ARATH9.250e-2743.67Serine/threonine-protein kinase Nek4 OS=Arabidopsi... [more]
NEK2_ORYSJ1.479e-2538.20Serine/threonine-protein kinase Nek2 OS=Oryza sati... [more]
NEK2_ORYSI1.479e-2537.29Serine/threonine-protein kinase Nek2 OS=Oryza sati... [more]
NEK1_ARATH2.204e-2337.77Serine/threonine-protein kinase Nek1 OS=Arabidopsi... [more]
NEK1_ORYSJ1.868e-1937.50Serine/threonine-protein kinase Nek1 OS=Oryza sati... [more]
NEK3_ORYSJ2.284e-1739.63Serine/threonine-protein kinase Nek3 OS=Oryza sati... [more]
NEK2_ARATH2.137e-1536.02Serine/threonine-protein kinase Nek2 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1BG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305557 ID=DY305557; Name=DY305557; organism=Citrus sinensis; type=EST; length=1272bp
GAGTCACTCCCCTCCTAATACTTACTACAATGCCTAGCTCTATATGTTAT
TCTGCGTCTTTGCCAGGTTTTCATGTCGGTGAACTTCTGATTTTTGAAAT
AGTTTTTCTGTTATTTTTTCTTAACACCCTTCTGTAGACTTACAGGCCTT
TATTAGTTACATAACATGGCTTTTCTGATCACTATTTTATTTCTTCCATT
TTTATTGTGTTTATAGTCGAGGACTTGTTAAAAGCATGCTGCGGAAGAAT
CCAGAATTTAGACCAAGTGCTGCCGAGTTGCTCTGTCACCCGCATCTTCA
ACCTTATGTGCTTGGAATTCATCTAAAACTGAATGGCCCTAGACGGAATA
CTTTCCCGTTAGAGTGGTCGGATTCCAACTTCAAAAAAACTAGATTCATG
GAACCAGAAGCTATTTCTATTCACAGTAACAGAGAAAAGCGGCAATCATT
CAGCAATGACAGGGCGTTGAATCCTAGTGTATCTGAAACTGAACAGGACT
CCCTATCTTCAACTCTAAGAGGACGTGCATTTGGAAATTATATGAATCAA
AAGTTCAAAGAACTATCTATTGGTGTTGTCCATGAAGAGCTTGGTGTTGA
CATGTCAACAACCCCAAATGTTTGCAATGCTGGTAAAACCCCCAGACTGA
CACCAGCCAAAGTTTCTGCTACTCCCAGAAAACAGGCAACACCATCAAAG
AATACCCATATTGGTTCCAAACGTGATTCGCTGCCATTTCACAAAATCCA
GGGGGGTAGCCCTTCCCCCCGGGACGTAAAACATCTCTTCTTTTAACCAC
AACCCGAACCTTCAAAACCCCTTATCACCCCATCACTTGCATCATGAAAT
CCCCAAATGTTTTGTCAATGCTTCAAAAATTGACAAAATTGCCAATTTTC
CCCTTGCCTCCTCAGAAGACCCCCTACTTTCCATCCCTAAAAACCTTTCA
AATTCGCTTGTTTCCCGTCTTCTTCCCGGGAAACCATTAATGGTCCAACC
ACAAAGGAAAAGTGCCCCAAAAAGGGTCAAGGAAAAAACCCCCTCCCGGG
CAAATTTGTTTGCCCCACACCCCAGGGAAATTTTCAAAAGGGAAATAAAA
TTTTAGAAACCCTAACCCCCCCCCATTGGGTTTCCCGTATTCTTCCTCTT
TGTGGAATCCTACCCCCCGCCCGTATATGAAACCCCTTCTTTCTTTTTCA
CACACCTTCTTATAAAGGGCACTTTTTAAGGGGTGTGTCCCTTTGTTAAT
TTTTTTGTGGCCCCCCGGCCTT
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