EY702560

Overview
NameEY702560
Unique NameEY702560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702560 vs. ExPASy Swiss-Prot
Match: TIF4B_ARATH (Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 82/196 (41.84%), Postives = 105/196 (53.57%), Query Frame = 3
Query:  132 MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKXXXXXXXXXXXXXXRRKLYSVPSHSAVTVKETCEP----------------APCRRQDAP-MPDFSGDSSSPLAADSE-----SISPRTTVAAKG--GSRTDDNPFTVEKVNVYDDMPSEKAQAILQLAATPLPLSQ 647
            M  G T ++S+L+KPL  LTE+DISQ+TREDCR++LKEKGMRRPSWNKSQAIQQV+ LK              R+ L S P +         EP                  C R+D+P   +FSG SS    AD +     S+SPR+        G  T    F   KVNVYD +P EKA++I+  AA P+ L +
Sbjct:    1 MDVGVTTAKSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKALYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEACGRIPLQEDDGACHRRDSPRSAEFSG-SSGQFVADKDSHKTVSVSPRSPAETNAVVGQMT---IFYSGKVNVYDGVPPEKARSIMHFAANPIDLPE 192          
BLAST of EY702560 vs. ExPASy Swiss-Prot
Match: TIF4A_ARATH (Protein TIFY 4A OS=Arabidopsis thaliana GN=TIFY4A PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.509e-26
Identity = 76/194 (39.18%), Postives = 104/194 (53.61%), Query Frame = 3
Query:  132 MSPGETVSRSLLDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVICLKXXXXXXXXXXXXXXRRKLYSVPSHSAVTVKETCEPA----------------PCRRQDAP-MPDFSGDSSSPLAADSESISPRTTVAAKGGSRTDD-----NPFTVEKVNVYDDMPSEKAQAILQLAATPLPLSQ 647
            M  G + ++S+L KPL  LTE+DISQ+TREDCR++LK+KGMRRPSWNKSQAIQQV+ LK              R+ L S P +         EP+                 C R D+P   +FSG S   +   SE    +TT++ +  + T +       F   KVNVYD +P EKA++I+  AA P+ L +
Sbjct:    1 MDVGVSPAKSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKALYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSNELEACGRVSYPEDNGACHRMDSPRSAEFSGGSGHFV---SEKDGHKTTISPRSPAETSELVGQMTIFYSGKVNVYDGIPPEKARSIMHFAANPIDLPE 191          
The following BLAST results are available for this feature:
BLAST of EY702560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TIF4B_ARATH3.591e-2841.84Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B ... [more]
TIF4A_ARATH1.509e-2639.18Protein TIFY 4A OS=Arabidopsis thaliana GN=TIFY4A ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-D11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702560 ID=EY702560; Name=EY702560; organism=Citrus sinensis; type=EST; length=853bp
CGCACGCTCGTGAAAGGTGAATAGCTATATTTACTAAAATGGTAACCAGA
GGAGGCACCGGGAAGTGTATTAGAACCTGAAAATTCATCGATCCGTCTCT
GCAAGTCATTATAGACCGGAAGTGCGAGGGCATGTCACCGGGAGAGACGG
TTTCCCGGTCGCTACTTGACAAGCCTCTCCACCAGCTCACTGAAGATGAC
ATTTCTCAGGTCACTCGTGAAGATTGTCGCCGATACCTCAAAGAAAAAGG
CATGAGGAGGCCATCGTGGAACAAATCGCAGGCGATCCAGCAAGTGATCT
GCCTCAAGACGCTGCTTGAAACAACGACGGATACCGAGGCCACTGAGGCA
CGAAGGAAACTCTACAGTGTCCCTTCACATTCGGCTGTTACAGTTAAGGA
AACATGTGAACCGGCTCCTTGTCGGCGTCAGGATGCCCCCATGCCTGATT
TTTCAGGCGACTCTTCTAGTCCACTTGCAGCTGACAGTGAATCTATTTCT
CCCAGAACTACAGTAGCAGCAAAGGGCGGCAGTAGGACAGATGACAATCC
TTTTACAGTGGAAAAGGTGAATGTCTACGATGATATGCCCAGTGAGAAGG
CACAAGCAATTCTGCAGCTTGCTGCAACCCCACTCCCTCTATCACAAAAA
GCTCCCTCAGATGGAAACACCGGACTACCCTCTGCTCCCGGCCCCCTTGA
AACTGCAGGTATCCATGTTGGCCCAAGCCCCCCGGGATCTTTCCAACGTT
ACACACACCGAAAAGGGGGGGAAAACTGGCCCCCTCCCCTGGGAGAAAAC
CAACCTTCTCCCTGAAACACGCTTTGATGGGCCCCCCCCCAAAAACCATC
CGG
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