EY702471

Overview
NameEY702471
Unique NameEY702471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702471_ssr281 microsatellite EY702471_ssr281:281..292. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702471 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.259e-21
Identity = 72/206 (34.95%), Postives = 103/206 (50.00%), Query Frame = 1
Query:   88 IPVPGVRFDNIFAGDRHIFPSIFYTKSGLQPAWSPNSSHQKEHHPFPISASVHSNPDVHDSEQVYGRTGEIKHNSVDQTVCEQSKGRPLEQLRHGSPAGNQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQKDAALTKFRLKRKDRCYGQKVRYQSPESLAEQRPRVKGQFVRQ 705
            +PV G+ FD     +     S+FY +S   P W+  +S  ++     IS   +   D  D++QV     +   + +           P ++ RH SP   +S +S + +  A  + SG+      N   A    +  VP+N +G              RH SQ++AAL KFRLKRKDRC+ +KVRYQS + LAEQRPRVKGQFVRQ
Sbjct:  427 VPVGGLTFDGQPFWNGAPVASLFYPQSA-PPIWNSKTSTWQDATTQAISLQQNGPKDT-DTKQVENVEEQTARSHLSANRKHLRIEIPTDEPRHVSPTTGESGSSTVLDS-ARKTLSGSVCDSSSNHMIAPTESSNVVPENPDGL-------------RHLSQREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQ 616          
BLAST of EY702471 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.917e-16
Identity = 67/198 (33.84%), Postives = 87/198 (43.94%), Query Frame = 1
Query:  157 YTKSGLQPAWSPNSSHQKEHHPFPISASVHSN---------------PDVHDSEQVYGRTGEIKHNSVDQTVCEQSKGRPLEQLRHGSPAGNQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQKDAALTKFRLKRKDRCYGQKVRYQSPESLAEQRPRVKGQFVRQ 705
            +TK G     S  SS  K     P+    H+N               P    S  VY  T E  +N+V+ +V     G       HGS     SSN     G+   S +G        +     SG+G+   NL                   SQ++AALTKFR KRK+RC+ +KVRYQS + LAEQRPRV+GQFVR+
Sbjct:  535 FTKPGAPKVSSAGSSSVKHSSFQPLPCDHHNNHASYNLVHVAERKKLPPQCGSSNVYNETIEGNNNTVNYSVNGSVSGSG-----HGSNGPYGSSNGMNAGGMNMGSDNGAGKN---GNGDGSGSGSGSGSGNL-------------ADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRK 711          
BLAST of EY702471 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.651e-13
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1
Query:  562 RHSSQKDAALTKFRLKRKDRCYGQKVRYQSPESLAEQRPRVKGQFVRQ 705
            + S Q++AALTKFR+KRKDRCY +KVRY+S + LAEQRPR+KGQFVRQ
Sbjct:  504 QQSLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQ 551          
BLAST of EY702471 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 1
Query:  187 SPNSSHQKEHHPFPISASVHSNPDVHDSEQVYGRTGEIKHNSVDQTVCEQSKGRPL--EQLRHGSP-----AGNQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQKDAALTKFRLKRKDRCYGQKVRYQSPESLAEQRPRVKGQFVR 702
            +P  SH+K      +++   S     + E +   +   ++  +  TV  Q +  P+  E  R  +      AG+QS+N G+        SS T    +  S+  + S                            SQ++AAL KFRLKRKDRC+ +KVRYQS + LAEQRPRVKGQFVR
Sbjct:  315 TPTESHEKLRK---VTSDQGSATTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAASKEVEAGSQSTNEGIAG-----QSSSTEKPKEEESAKQRWS---------------------------RSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR 458          
BLAST of EY702471 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  367 HGSPAGNQSSNSGLCNGLANNSSSGTYSRIDR-NSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQKD---AALTKFRLKRKDRCYGQKVRYQSPESLAEQRPRVKGQFVRQ 705
            H +  G   SNSG  NG    + S T    +R N   A  +   + P   NG         N +  +  +Q++   AA+ KFR KRK+R +G+KVRYQS + LAEQRPRV+GQFVRQ
Sbjct:  611 HAANYGVNGSNSGSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSG---SGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQ 724          
BLAST of EY702471 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  367 HGSPAGNQSSNSGLCNGLANNSSSGTYSRIDR-NSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHSSQKD---AALTKFRLKRKDRCYGQKVRYQSPESLAEQRPRVKGQFVRQ 705
            H +  G   SNSG  NG    + S T    +R N   A  +   + P   NG         N +  +  +Q++   AA+ KFR KRK+R +G+KVRYQS + LAEQRPRV+GQFVRQ
Sbjct:  611 HAANYGVNGSNSGSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSG---SGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQ 724          
The following BLAST results are available for this feature:
BLAST of EY702471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRR95_ORYSJ6.259e-2134.95Two-component response regulator-like PRR95 OS=Ory... [more]
APRR7_ARATH7.917e-1633.84Two-component response regulator-like APRR7 OS=Ara... [more]
APRR5_ARATH1.651e-1372.92Two-component response regulator-like APRR5 OS=Ara... [more]
APRR9_ARATH3.678e-1332.40Two-component response regulator-like APRR9 OS=Ara... [more]
PRR37_ORYSJ2.018e-1141.03Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSI2.018e-1141.03Two-component response regulator-like PRR37 OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-D02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702471 ID=EY702471; Name=EY702471; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGGGAAAATATGACATCTCTGGTCATGGGTCAATCAGAACA
AGCTGCAGTAGCATTTGCAGGGCCTCATCTTGGGTTCATTCCGGTCCCAG
GGGTACGGTTTGATAATATTTTTGCAGGGGATAGGCACATTTTTCCATCC
ATATTCTACACAAAGTCAGGTTTACAACCTGCATGGAGTCCAAACTCCTC
CCACCAGAAAGAACACCATCCTTTTCCTATAAGTGCCTCTGTTCATTCCA
ACCCTGATGTTCATGACTCGGAACAAGTTTACGGACGGACGGGTGAAATT
AAGCATAATTCTGTTGACCAAACTGTGTGTGAGCAGAGCAAAGGGCGGCC
TTTGGAACAGTTGAGACATGGTTCCCCAGCAGGCAATCAGAGCTCCAATA
GTGGTCTATGCAATGGTCTGGCTAACAACAGTAGTAGTGGAACATACAGT
AGAATTGACAGAAATTCCTCTTCAGCAAAGGCAAGTGGGACTGGGACAGT
TCCACAGAACCTCAATGGTTGTACTCTATTCATTCATGACGGATTCAATG
GCATTAGTGCTCGTCACTCCAGCCAAAAGGATGCAGCTTTGACAAAATTC
CGGCTCAAGCGGAAAGATAGATGCTATGGACAAAAAGTTCGATACCAAAG
CCCGGAAAGTTTAGCAGAGCAACGACCCCGGGTCAAAGGACAGTTTGTTC
GTCAAGGGAAAAATGAAACCAAGATGCTAACGCCGATGGGTGTCCTTAAT
CTTGAGAATGGACTTAAGGGGAATTTAATTTCTCCCTCCGGGGATATAAG
GCCCCAAGAATGGTGTATTTTTCCAAAAGCAAAGGGGGACTCTTTGAACG
CCTCCAATATTGGCAGGTCCTTTTGGAGTGAGGGGACCCCCCCTAAACTT
TCCATTTTACTCCGTCCC
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