CX078241

Overview
NameCX078241
Unique NameCX078241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4929 contig Csv1_Contig4929:113..988. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: THOC3_MOUSE (THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.329e-49
Identity = 92/177 (51.98%), Postives = 126/177 (71.19%), Query Frame = -3
Query:  365 HRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIYGFEN 874
            HR K    F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH + C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASASED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++G  N
Sbjct:  173 HRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPN 349          
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: THOC3_HUMAN (THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.329e-49
Identity = 92/177 (51.98%), Postives = 126/177 (71.19%), Query Frame = -3
Query:  365 HRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIYGFEN 874
            HR K    F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH + C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASASED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++G  N
Sbjct:  173 HRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPN 349          
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: THOC3_BOVIN (THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.329e-49
Identity = 92/177 (51.98%), Postives = 126/177 (71.19%), Query Frame = -3
Query:  365 HRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIYGFEN 874
            HR K    F +EVNEI+WN    MFFLT GNG + +L+YP L+P+ ++ AH + C CI  DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G  +ASASED FIDI+ V TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  +++G  N
Sbjct:  173 HRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPN 349          
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: YJKA_SCHPO (Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces pombe GN=SPCC18B5.10c PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.427e-35
Identity = 61/147 (41.50%), Postives = 101/147 (68.71%), Query Frame = -3
Query:  413 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 853
            E NE  W+ + ++FF+TTG GTV+++ +PSL+ +  + AH + C+CI   P  R+ A+G AD++ SLWD  E++C R+ T++++P+RT+SFS+   Y+AS SED ++DI++  TG  + +IP    +N V W+P  ++LAYA  + N
Sbjct:  154 ETNECCWSFSEDLFFMTTGLGTVQIMEWPSLKRVYDIKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSEDRYVDIADTKTGDQIWKIPTNGPLNKVAWHPTKHILAYAVSEPN 300          
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: AAC3_DICDI (WD repeat-containing protein AAC3 OS=Dictyostelium discoideum GN=AAC3 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.996e-29
Identity = 62/170 (36.47%), Postives = 105/170 (61.76%), Query Frame = -3
Query:  365 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTY-----PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 859
            G E+N++ W+  G++  +    G +E   +       ++ L T+  HTA  YC+  DP G+Y A GSADS+VSLWDI +M+CV+TF K  +P R++SFS  G +IA++S +  I+I ++ + + +H I C + ++S+ W+P   LLAYA  + N+   D  + R++G+ +
Sbjct:  312 GEELNQVGWDNNGDLILMANSMGNIEAYKFLPKSTTHVKHLKTLYGHTASIYCMEFDPTGKYLAAGSADSIVSLWDIEDMMCVKTFIKSTFPCRSVSFSFDGQFIAASSFESTIEIFHIESSQPIHTIEC-SGVSSLMWHPTLPLLAYA-PEINENNKDPSI-RVFGYHS 478          
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.466e-13
Identity = 45/148 (30.41%), Postives = 73/148 (49.32%), Query Frame = -3
Query:  416 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH-QIPCRAAMNSVEWNPKYNLLAYAGDDK 856
            +EV  +A++  GE     +G+ T+++        L T+  HT    C+A  P G   A  +AD  + LWD+S+  C+RT       VR+++FS  G  +AS S D  I I N HTG  +   I    ++ S+ ++P   +L     D+
Sbjct:  727 HEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDR 874          
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: TBL1R_MOUSE (F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = -3
Query:  455 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN 853
            EVN I W+ TG +    + + T+++ +      +  + AH    Y I   P G            A  S DS V LWD+   +C+ T TK + PV +++FS  G Y+AS S D  + I N  TG  VH       +  V WN
Sbjct:  351 EVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 492          
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: TBL1R_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = -3
Query:  455 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN 853
            EVN I W+ TG +    + + T+++ +      +  + AH    Y I   P G            A  S DS V LWD+   +C+ T TK + PV +++FS  G Y+AS S D  + I N  TG  VH       +  V WN
Sbjct:  351 EVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 492          
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: TB1RB_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = -3
Query:  455 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN 853
            EVN I W+ TG +    + + T+++ +      +  + AH    Y I   P G            A  S DS V LWD+   +C+ T TK + PV +++FS  G Y+AS S D  + I N  TG  VH       +  V WN
Sbjct:  359 EVNAIKWDPTGNLLASCSDDMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 500          
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: TB1RA_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-A PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = -3
Query:  455 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN 853
            EVN I W+ TG +    + + T+++ +      +  + AH    Y I   P G            A  S DS V LWD+   +C+ T TK + PV +++FS  G Y+AS S D  + I N  TG  VH       +  V WN
Sbjct:  356 EVNAIKWDPTGNLLASCSDDMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 497          
The following BLAST results are available for this feature:
BLAST of CX078241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
THOC3_MOUSE1.329e-4951.98THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=... [more]
THOC3_HUMAN1.329e-4951.98THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=... [more]
THOC3_BOVIN1.329e-4951.98THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 ... [more]
YJKA_SCHPO1.427e-3541.50Uncharacterized WD repeat-containing protein C18B5... [more]
AAC3_DICDI1.996e-2936.47WD repeat-containing protein AAC3 OS=Dictyostelium... [more]
Y2800_ANASP4.466e-1330.41Uncharacterized WD repeat-containing protein alr28... [more]
TBL1R_MOUSE1.697e-1231.69F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
TBL1R_HUMAN1.697e-1231.69F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
TB1RB_XENLA2.895e-1231.69F-box-like/WD repeat-containing protein TBL1XR1-B ... [more]
TB1RA_XENLA2.895e-1231.69F-box-like/WD repeat-containing protein TBL1XR1-A ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_7H06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7H06-P11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078241 ID=CX078241; Name=CX078241; organism=Citrus sinensis; type=EST; length=876bp
CTTTCATTTCATTCACCTCAAAAAAACAATGTAACAAGCAAAAAAAATAA
AGTTTCAAAGATTTGCTGCAGGGATAAACAGTTTAAAAATGTCCAGAAGA
CATAAATAAAATATGAGATTAAATATATTCTTCCTTCAGCAATTAATCAA
ACTCTTCGACAATGCTTCCATTATGTAATTTCCATGTGCTCTCAGAGCCG
CATCACAAGGAAGGTATACATTAAATTACCCATAGATCAAGGAACCCTTC
AACTTCGACAGTGCGTTCTCTAATTTCATGCGTTCTCAAAGCCATATATT
AGGAAAACACCCATAGATTAAGGAACCCCTTCAACTTCGACAGTGACGTT
CTCTAATTTCATGCATTCTCAAAGCCATATATTCGGAAAACACCTTCATC
AGCCTGATATTTATTCTTGTCATCCCCTGCATATGCAAGTAGATTGTATT
TTGGATTCCATTCAACACTATTCATTGCAGCACGACATGGAATTTGATGC
ACTGTTCGGCCGGTGTGAACATTTGATATATCTATAAATAAGTCTTCGCT
GGCAGAAGCAATATAATCTCCTGTATGACTGAAGCTAATTGTCCTGACAG
GCCACTCGAGTTTGGTAAATGTTCGTACACAGAGCATCTCTGAGATATCC
CAAAGGCTGACTAAGGAATCGGCACTTCCAACAGCAAAATATCTTCCCAT
TGGATCAATAGCAATGCAATAGCAACCAGCTGTATGAGCCACAACAGTGT
CAAGTGGACGAAGAGAAGGGTATGTTAGTACTTCAACAGTACCATTTCCA
GTTGTCAAAAAGAACATTTCCCCTGTCATGTTCCAAGCAATCTCATTTAC
CTCATAACCAAATTTGCGCCTATGAA
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