CX078241
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: THOC3_MOUSE (THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.329e-49 Identity = 92/177 (51.98%), Postives = 126/177 (71.19%), Query Frame = -3 Query: 365 HRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIYGFEN 874 HR K F +EVNEI+WN MFFLT GNG + +L+YP L+P+ ++ AH + C CI DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G +ASASED FIDI+ V TG + ++ C + +V W+PK LLA+A DDK+ KY + + G +++G N Sbjct: 173 HRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPN 349
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: THOC3_HUMAN (THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.329e-49 Identity = 92/177 (51.98%), Postives = 126/177 (71.19%), Query Frame = -3 Query: 365 HRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIYGFEN 874 HR K F +EVNEI+WN MFFLT GNG + +L+YP L+P+ ++ AH + C CI DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G +ASASED FIDI+ V TG + ++ C + +V W+PK LLA+A DDK+ KY + + G +++G N Sbjct: 173 HRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPN 349
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: THOC3_BOVIN (THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.329e-49 Identity = 92/177 (51.98%), Postives = 126/177 (71.19%), Query Frame = -3 Query: 365 HRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIYGFEN 874 HR K F +EVNEI+WN MFFLT GNG + +L+YP L+P+ ++ AH + C CI DPMG+YFA GSAD+LVSLWD+ E++CVR F++L+WPVRT+SFSH G +ASASED FIDI+ V TG + ++ C + +V W+PK LLA+A DDK+ KY + + G +++G N Sbjct: 173 HRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPN 349
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: YJKA_SCHPO (Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces pombe GN=SPCC18B5.10c PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.427e-35 Identity = 61/147 (41.50%), Postives = 101/147 (68.71%), Query Frame = -3 Query: 413 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 853 E NE W+ + ++FF+TTG GTV+++ +PSL+ + + AH + C+CI P R+ A+G AD++ SLWD E++C R+ T++++P+RT+SFS+ Y+AS SED ++DI++ TG + +IP +N V W+P ++LAYA + N Sbjct: 154 ETNECCWSFSEDLFFMTTGLGTVQIMEWPSLKRVYDIKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSEDRYVDIADTKTGDQIWKIPTNGPLNKVAWHPTKHILAYAVSEPN 300
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: AAC3_DICDI (WD repeat-containing protein AAC3 OS=Dictyostelium discoideum GN=AAC3 PE=2 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.996e-29 Identity = 62/170 (36.47%), Postives = 105/170 (61.76%), Query Frame = -3 Query: 365 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTY-----PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 859 G E+N++ W+ G++ + G +E + ++ L T+ HTA YC+ DP G+Y A GSADS+VSLWDI +M+CV+TF K +P R++SFS G +IA++S + I+I ++ + + +H I C + ++S+ W+P LLAYA + N+ D + R++G+ + Sbjct: 312 GEELNQVGWDNNGDLILMANSMGNIEAYKFLPKSTTHVKHLKTLYGHTASIYCMEFDPTGKYLAAGSADSIVSLWDIEDMMCVKTFIKSTFPCRSVSFSFDGQFIAASSFESTIEIFHIESSQPIHTIEC-SGVSSLMWHPTLPLLAYA-PEINENNKDPSI-RVFGYHS 478
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.466e-13 Identity = 45/148 (30.41%), Postives = 73/148 (49.32%), Query Frame = -3 Query: 416 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH-QIPCRAAMNSVEWNPKYNLLAYAGDDK 856 +EV +A++ GE +G+ T+++ L T+ HT C+A P G A +AD + LWD+S+ C+RT VR+++FS G +AS S D I I N HTG + I ++ S+ ++P +L D+ Sbjct: 727 HEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDR 874
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: TBL1R_MOUSE (F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12 Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = -3 Query: 455 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN 853 EVN I W+ TG + + + T+++ + + + AH Y I P G A S DS V LWD+ +C+ T TK + PV +++FS G Y+AS S D + I N TG VH + V WN Sbjct: 351 EVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 492
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: TBL1R_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12 Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = -3 Query: 455 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN 853 EVN I W+ TG + + + T+++ + + + AH Y I P G A S DS V LWD+ +C+ T TK + PV +++FS G Y+AS S D + I N TG VH + V WN Sbjct: 351 EVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 492
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: TB1RB_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-B PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12 Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = -3 Query: 455 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN 853 EVN I W+ TG + + + T+++ + + + AH Y I P G A S DS V LWD+ +C+ T TK + PV +++FS G Y+AS S D + I N TG VH + V WN Sbjct: 359 EVNAIKWDPTGNLLASCSDDMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 500
BLAST of CX078241 vs. ExPASy Swiss-Prot
Match: TB1RA_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-A PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12 Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = -3 Query: 455 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN 853 EVN I W+ TG + + + T+++ + + + AH Y I P G A S DS V LWD+ +C+ T TK + PV +++FS G Y+AS S D + I N TG VH + V WN Sbjct: 356 EVNAIKWDPTGNLLASCSDDMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 497 The following BLAST results are available for this feature:
BLAST of CX078241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078241 ID=CX078241; Name=CX078241; organism=Citrus sinensis; type=EST; length=876bpback to top |