CX078123

Overview
NameCX078123
Unique NameCX078123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX078123 vs. ExPASy Swiss-Prot
Match: CPL4_ARATH (RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.175e-20
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 2 
Query:  347 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEK 520
            ++E+LKGCK+VFS  FP+K     H LWK+ E+LGATC+ E+D SVTHVV+     EK
Sbjct:  338 RKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVGTEK 395

HSP 2 Score: 47.3654 bits (111), Expect = 3.175e-20
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:  513 TKKSHWAAKEAKFLVDPRWIEAANCLWQGQLEEKFPVKQTKPE 641
            T+K+ WA +E K++V   WI+AAN LW  Q EE F ++Q K +
Sbjct:  393 TEKARWAVREKKYVVHRGWIDAANYLWMKQPEENFGLEQLKKQ 435
[Close]
BLAST of CX078123 vs. ExPASy Swiss-Prot
Match: CPL3_ARATH (RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 7.795e-13
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 2 
Query:  347 QREVLKGCKLVFSHAFP-SKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVS 526
            QR++L GC++VFS   P  +   H+H LW+  EQ GA C+ ++D  VTHVV+N    +KV+
Sbjct: 1147 QRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVN 1207

HSP 2 Score: 31.9574 bits (71), Expect = 7.795e-13
Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 3 
Query:  513 TKKSHWAAKEAKFLVDPRWIEAANCLWQGQLEEKFPV 623
            T K +WA    +F+V P W+EA+  L+Q   E  + +
Sbjct: 1203 TDKVNWALTRGRFVVHPGWVEASAFLYQRANENLYAI 1239
The following BLAST results are available for this feature:
BLAST of CX078123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CPL4_ARATH3.175e-2055.17RNA polymerase II C-terminal domain phosphatase-li... [more]
CPL3_ARATH7.795e-1344.26RNA polymerase II C-terminal domain phosphatase-li... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_7B03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7B03-D5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078123 ID=CX078123; Name=CX078123; organism=Citrus sinensis; type=EST; length=825bp
TAGGAACTTGCAAATGATCTTGCTGGCAGAGATGTAAGGCAGGTAAGACA
TTTGTTGAATAATTGACTGTGATCATGACCAGTATCGGTTGGGTCCTTAT
ATTCTTCTGTAAGTGATATTTACCATCACCCTTTTTTTTTTTTTTTTTTG
TCTTCATACCTAGTCTAATTCCAATGAATCTGTTTTCTATTATTGCAAAT
TGATTTATCATCGCACAAATGTTGGTTTATGGAAGTCATTTCTGAGTTAT
AGAACTCCATTTATTTGCTCGCTAACTCCAATAGGAAGATCTACGTTTAT
GAGGACCTTTGATCATCACATGTTGCTGGCAGGTACTGAAAATGGTCAGA
GGGAAGTCTTAAAGGGGTGTAAACTTGTCTTCAGTCATGCTTTTCCAAGC
AAATTTCCAGCACATATTCACTATCTGTGGAAGGTGGTGGAGCAGTTAGG
AGCTACGTGCTCGATAGAACTTGATCCATCAGTGACACACGTGGTTTCAA
ACAAATGCTCAAACGAAAAAGTCTCACTGGGCAGCAAAGGAGGCCAAGTT
TTTGGTGGATCCACGGTGGATAGAGGCAGCCAACTGTTTGTGGCAAGGGC
AACTCGAAGAGAAGTTTCCTGTGAAGCAAACCAAACCTGAAGAGAACTTT
CAAGCGAAACAAACGAAGGACCAATAACCGATACGTTTATGTAGTTGCTA
ACCCTCCAGTGAATCTTTATGAATGTCTTGGTTCTTTCCTAGCATCATTA
TCGGTGCATGATCGATGTGCATCAATTGTGGCAAAAATTATATCAGACTG
GCACTTCATTTGTTTAATGGATCGT
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