EY702327

Overview
NameEY702327
Unique NameEY702327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702327_ssr148 microsatellite EY702327_ssr148:148..157. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9976 contig Csv1_Contig9976:1..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702327 vs. ExPASy Swiss-Prot
Match: TGFA1_HUMAN (Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.765e-20
Identity = 76/283 (26.86%), Postives = 125/283 (44.17%), Query Frame = 3
Query:   21 NQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC--AEIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGNKLFAMYPD 848
            N  +PD +I  +  K  + L +YL+ L+ D+     ++HT  A+   +  +      SG  A  T+                   Q +L+  LQ SDLY    +L+ ++G+ L +E AIL+ KLG+    L IL  +L+D  AAE YC     GR   + Q     LL +YL +      +  AAV LL+ H    D  QVL+ L     +QL    +              Q+   L+R+ ++     +++ +   +Q++D+ LC  C       +F  YP+
Sbjct:  572 NSFNPDDIINCL-KKYPKALVKYLEHLVIDKRLQKEEYHTHLAVLYLEEVLLQRASASGKGAEATE------------------TQAKLRRLLQKSDLYRVHFLLERLQGAGLPMESAILHGKLGEHEKALHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLLAIYLHAGPTAHELAVAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHARRTMQVALGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPN 835          
BLAST of EY702327 vs. ExPASy Swiss-Prot
Match: TGFA1_DANRE (Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.358e-19
Identity = 86/307 (28.01%), Postives = 134/307 (43.65%), Query Frame = 3
Query:    3 TRPKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWL-EKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIG-------RPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGNKLFAMYPDDTNVCYKWYRKQGDPLP 899
            T  +R  QL+ D VI  +  K  + L  YL+ L+ ++     ++HT  A+  A+  +      S S+    Q+   R               ++LQ  L+ S+LY  + +L  I+ SEL L E+A L+ KL +    L +L  +L+DS AAE+YC+          R + + QLL +YLD          AAV LL+ H E  D ++VL+ L  D  L L    +              Q+   L+RA ++     RL+ R   V ++++  C  CH        A  P  T V      K+   LP
Sbjct:  566 TSEERRGQLNADDVITYLQ-KHSQALLLYLEHLVLEKKLQKEKYHTHLAVLYAEKVLGLISRPSTSEE---QLSAAR---------------QKLQRLLKESNLYRVQLLLGKIQDSELLLLERATLHGKLEEHDKALHVLVHQLKDSSAAEEYCSWASASQDSSYRQNLFHQLLSVYLDPDVPGGAQTVAAVDLLNRHAEVFDAVRVLKLLPEDWSLPLLRPFLCGAMRATVHARCTSQVALGLARAQNLQLLHDRLKYRGGPVLVSEKKGCQLCHNTFSEPDCACLPGGTPVHINCVAKKALDLP 853          
BLAST of EY702327 vs. ExPASy Swiss-Prot
Match: TGFA1_MOUSE (Transforming growth factor-beta receptor-associated protein 1 OS=Mus musculus GN=Tgfbrap1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.176e-18
Identity = 69/280 (24.64%), Postives = 122/280 (43.57%), Query Frame = 3
Query:   30 SPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC-------AEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGNKLFAMYPD 848
            +PD +I+++  K  + L +YL+ L+ D+     ++HT  A+   +  +       G     T+                   Q +L+  LQ SDLY    + + ++G+ L +E AIL+ KLG+    L IL  ++ D  AAE YC           R   +  LL MYL +    + +  AAV LL++H    D  QVL+ L     +QL    +              Q+   L+++ ++     +++ +   V++++  LC  C    G  +F  YP+
Sbjct:  575 NPDNIISSL-KKYPKALVKYLEHLVIDRRLQKEEYHTHLAILYLEEVLRQRVSTGGKDVEATE------------------TQAKLRRLLQKSDLYRVHLLKEKVQGAGLPMESAILHGKLGEHEKALHILVHEMGDFSAAEDYCLWSSEGQGAACRQRLFHTLLAMYLRAGPSAQDLTVAAVDLLNHHAREFDVTQVLQLLPDTWSVQLLCPFLMGAMRDSIHARRTTQVALGLAKSENLIYMYDKMKLKGNAVRLSERELCQLCQNPFGEPVFVRYPN 835          
BLAST of EY702327 vs. ExPASy Swiss-Prot
Match: TGFA1_BOVIN (Transforming growth factor-beta receptor-associated protein 1 OS=Bos taurus GN=TGFBRAP1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.143e-17
Identity = 76/280 (27.14%), Postives = 121/280 (43.21%), Query Frame = 3
Query:   30 SPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC--AEIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGNKLFAMYPD 848
            +PD +I+ +  K  + L +YL+ L+ ++     ++HT  A+       E  ++   +     ++ ET               Q +L+  LQ SDLY    ++D   G+ L LE AIL+ KL Q    L IL  +L D  AAE YC     GR   Y Q     LL +YL           AAV LL+ H    D  QVL+ L     +QL    +              Q+   L+R+ ++  +  +++ +   V+++DE LC  C       +F  YP+
Sbjct:  574 NPDDIISCL-KKYPQALVKYLEHLVTERRLQKEEYHTHLAVLYLD---EVLQQRPCTPDKDAEVTET---------------QAKLRRLLQESDLYRVHFLMDRTRGAGLPLESAILHGKLEQHEEALHILVHELADFPAAEDYCLWRSEGRDPPYRQRLFHLLLAVYLGPGPAAPARTVAAVDLLNRHAVEFDAAQVLQLLPGTWSVQLLRPFLMGAMRDSIHARRTTQVAVGLARSENLIYKYDKMKLKGSSVRLSDEKLCQMCQNPFLEPVFVRYPN 834          
BLAST of EY702327 vs. ExPASy Swiss-Prot
Match: VPS39_MOUSE (Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 75/318 (23.58%), Postives = 126/318 (39.62%), Query Frame = 3
Query:   18 INQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTL---------------YALSL--AKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC------AEIGRPDAYMQLLDMYLD----------SQDGKEPM--FKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGNKLFAMYPDDTNVCY 866
            +  L  D+V+  +      +   YL+ +I   +   +QFH                 Y LSL   KS + A EE       G ++GE R               ++L +FL+ S  YDP  ++       L  E+A+L  ++G+    L I    L+D++ A++YC       + G  D Y+ LL MYL             +  EP    +AA+++L  H   LD  + +  L  +  +      +              Q++ NL  A  +  +  R+  +     I +E +C  C  ++GN  FA YP+   V Y
Sbjct:  580 VESLPRDRVLNFLIENFKALAIPYLEHIIHVWEETGSQFHNCLIQLYCEKVQSLMKDYLLSLPTGKSPVPAGEE-------GGELGEYR---------------QKLLMFLEISSHYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAKEYCHKHYDQNKEGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHYSKLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHY 875          
The following BLAST results are available for this feature:
BLAST of EY702327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TGFA1_HUMAN6.765e-2026.86Transforming growth factor-beta receptor-associate... [more]
TGFA1_DANRE3.358e-1928.01Transforming growth factor-beta receptor-associate... [more]
TGFA1_MOUSE2.176e-1824.64Transforming growth factor-beta receptor-associate... [more]
TGFA1_BOVIN3.143e-1727.14Transforming growth factor-beta receptor-associate... [more]
VPS39_MOUSE5.741e-1123.58Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 P... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-G06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702327 ID=EY702327; Name=EY702327; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGAAAAGAATAAATCAGCTTTCACCAGACAAAGTTATTGCA
GCAATTGATTCAAAAAAGGTTGAAATTCTCCAAAGATATCTGCAGTGGTT
GATTGAAGATCAAGACTCTGATGACACACAGTTCCATACATTATATGCTC
TCTCTCTTGCAAAGTCGGCAATTGAAGCATTTGAAGAAGAAAGTGGCTCA
AAAGCCTTTGGTACTCAAATGGGAGAAACAAGAAGTTCTGGTTATGGGAA
GAACTCAATCTTTCAATGTCCCGTACAGGAAAGATTGCAGATATTTTTAC
AGTCTTCAGACTTGTATGATCCAGAAGACGTCCTTGACTTAATTGAAGGA
TCCGAATTATGGTTGGAAAAGGCTATTCTATACAGAAAATTGGGACAAGA
GACATTGGTTCTCCAAATTTTAGCCTTAAAGTTGGAGGACAGTGAAGCTG
CAGAACAATATTGTGCTGAGATTGGAAGACCGGATGCCTATATGCAGTTG
CTTGATATGTATTTAGATTCACAGGACGGTAAGGAGCCTATGTTCAAGGC
TGCTGTTCGCCTTTTACACAATCATGGAGAGTCGTTGGATCCCTTGCAAG
TTTTAGAGACATTGTCTCCTGATATGCCGCTTCAACTTGCGTCGGATACA
ATCCTGAGGATGTTAAGAGCTCGACTTCACCATCACCGCCAAGGACAAAT
AGTGCATAATCTATCCCGAGCTGTAGACATTGATGCAAGATTGGCAAGAT
TAGAGGAAAGATCACGACATGTGCAAATTAATGACGAGAGTCTCTGTGAT
TCTTGTCATGCGCGCCTTGGAAACAAACTATTTGCAATGTACCCTGATGA
TACGAATGTCTGTTATAAGTGGTATCGTAAACAAGGGGATCCACTTCCAT
CACT
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