CX077921

Overview
NameCX077921
Unique NameCX077921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11571 contig Csv1_Contig11571:54..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: ESYT2_MOUSE (Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.180e-16
Identity = 58/198 (29.29%), Postives = 108/198 (54.55%), Query Frame = 1
Query:   16 LKDLQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEAD 582
            +K +Q+   +RVI + L  ++P + A+ +  L +P   I++T      +L  IPG+  + D  +  II++ L  P+RI VP+    V  ++L    P+G + +  ++A +L+  +        GKSDPY ++ +   +F+ K  V+  NL+P WN+ +E +  +   Q L  E+FD+D  +D  LG + + LI++E +
Sbjct:  215 VKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLT---NLLDIPGLNGLSDTIILDIISNYLVLPNRITVPLVS-EVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSK--VIKENLSPKWNEVYEALVYEHPGQELEIELFDEDPDKDDFLGSLMIDLIEVEKE 406          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: ESYT1_MOUSE (Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.180e-16
Identity = 59/189 (31.22%), Postives = 100/189 (52.91%), Query Frame = 1
Query:   16 LKDLQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKL 558
            +K +Q+  V+RVI + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L  P+R++VP+     D ++L    P+G + + ++ A  L + +        GKSDPYA+V +       + V+D  LNP W +T+E+I  +   Q +  EVFDKD  +D  LG +KL
Sbjct:  224 VKGMQLHGVLRVILEPLTGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQ-TFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFLGRMKL 408          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: ESYT1_RAT (Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.541e-16
Identity = 59/189 (31.22%), Postives = 100/189 (52.91%), Query Frame = 1
Query:   16 LKDLQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKL 558
            +K +Q+  V+RVI + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L  P+R++VP+     D ++L    P+G + + ++ A  L + +        GKSDPYA+V +       + V+D  LNP W +T+E+I  +   Q +  EVFDKD  +D  LG +KL
Sbjct:  226 VKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQ-TFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFLGRMKL 410          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: ESYT2_HUMAN (Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16
Identity = 56/198 (28.28%), Postives = 108/198 (54.55%), Query Frame = 1
Query:   16 LKDLQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEAD 582
            +K +Q+   +RVI + L  ++P + A+ +  L +P   I++T      +L  +PG+  + D  +  II++ L  P+RI VP+    V  ++L    P+G + +  ++A +L+  +        GKSDPY ++ +   +F+  + V+  NL+P WN+ +E +  +   Q L  E+FD+D  +D  LG + + LI++E +
Sbjct:  291 VKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLT---NLLDVPGLNGLSDTIILDIISNYLVLPNRITVPLVS-EVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQ--SRVIKENLSPKWNEVYEALVYEHPGQELEIELFDEDPDKDDFLGSLMIDLIEVEKE 482          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: ESYT1_PONAB (Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.855e-16
Identity = 58/189 (30.69%), Postives = 100/189 (52.91%), Query Frame = 1
Query:   16 LKDLQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKL 558
            +K +Q+  V+RVI + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L  P+R++VP+     D ++L    P+G + + ++ A  L + +        GKSDPYA+V +       + V+D  LNP W +T+E++  +   Q +  EVFDKD  +D  LG +KL
Sbjct:  234 VKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLTSKDKYVKGLIEGKSDPYALVRLGTQ-TFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFLGRMKL 418          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: ESYT1_HUMAN (Extended synaptotagmin-1 OS=Homo sapiens GN=ESYT1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.855e-16
Identity = 58/189 (30.69%), Postives = 100/189 (52.91%), Query Frame = 1
Query:   16 LKDLQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKL 558
            +K +Q+  V+RVI + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L  P+R++VP+     D ++L    P+G + + ++ A  L + +        GKSDPYA+V +       + V+D  LNP W +T+E++  +   Q +  EVFDKD  +D  LG +KL
Sbjct:  234 VKGMQLHGVLRVILEPLIGDLPFVGAVSMFFIRRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRLGTQ-TFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFLGRMKL 418          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: EST2B_XENLA (Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-B PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.855e-16
Identity = 58/198 (29.29%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   16 LKDLQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEAD 582
            +K +Q+   +RVI + L  ++P + A+ +  L +P   I++T      ++  +PG+  + D  +  II++ L  P+RI VP+    V  ++L    P+G + +  ++A +L   +        GKSDPY VV +   +F+ K  V+  NLNP WN+ +E +  +   Q L  E+FD+D  +D  LG + + L+++E +
Sbjct:  223 VKSIQLHGTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGLT---NMLDMPGLNGLSDTIILDIISNYLVLPNRITVPLVS-DVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYGVVRLGNQVFQSK--VIKENLNPKWNEVYEALVHEHPGQELEIELFDEDTDKDDFLGSLLIDLVEVEKE 414          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: EST2A_XENLA (Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.855e-16
Identity = 58/198 (29.29%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   16 LKDLQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMI------GKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEAD 582
            +K +Q+   +RVI + L  ++P + A+ +  L +P   I++T      ++  +PG+  + D  +  II++ L  P+RI VP+    V  ++L    P+G + +  ++A +L   +        GKSDPY VV +   +F+ K  V+  NLNP WN+ +E +  +   Q L  E+FD+D  +D  LG + + L+++E +
Sbjct:  219 VKSIQLHGTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGLT---NMLDMPGLNGLSDTIILDIISNYLVLPNRITVPLVS-DVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYGVVRLGNQVFQSK--VIKENLNPKWNEVYEALVHEHPGQELEIELFDEDTDKDDFLGSLLIDLVEVEKE 410          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: ESYT3_MOUSE (Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.906e-15
Identity = 60/189 (31.75%), Postives = 101/189 (53.44%), Query Frame = 1
Query:   25 LQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIG-GIPVDTSELELKPQGKVAVTIVKANNLKNMEMI----GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDL 573
            +Q+   +RVI + L  + P I AV V  L +P  +I++T      +L  +PGI ++ D  ++ +I   L  P+R+ VP+  G+ V    + L P G + V +++A  L   +      GKSDPYA V I  L   ++  +  NLNP WN+ FE +  +   Q L  +++D+D  +D  LG +++ L D+
Sbjct:  219 VQLQGTLRVILEPLLVDKPFIGAVTVFFLQKPHLQINWTGLT---NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPL-PCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIG-LQHCRSRTIYKNLNPTWNEVFEFMVYEVPGQDLEVDLYDEDTDKDDFLGSLQICLGDV 402          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: ESYT3_HUMAN (Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.795e-15
Identity = 59/189 (31.22%), Postives = 100/189 (52.91%), Query Frame = 1
Query:   25 LQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIG-GIPVDTSELELKPQGKVAVTIVKANNLKNME----MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDL 573
            +Q+   +RVI + L  + P + AV V  L +P  +I++T      +L   PGI D+ D  ++ +I   L  P+R+ VP+  G+ +      L P G + V +++A  L   +    + GKSDPYA V I  L   ++  +  NLNP WN+ FE +  +   Q L  +++D+D  +D  LG +++ L D+
Sbjct:  215 IQLQGTLRVILEPLLVDKPFVGAVTVFFLQKPHLQINWTGLT---NLLDAPGINDVSDSLLEDLIATHLVLPNRVTVPVKKGLDLTNLRFPL-PCGVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIG-LQHFRSRTIYRNLNPTWNEVFEFMVYEVPGQDLEVDLYDEDTDRDDFLGSLQICLGDV 398          
The following BLAST results are available for this feature:
BLAST of CX077921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ESYT2_MOUSE1.180e-1629.29Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 ... [more]
ESYT1_MOUSE1.180e-1631.22Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 ... [more]
ESYT1_RAT1.541e-1631.22Extended synaptotagmin-1 OS=Rattus norvegicus GN=E... [more]
ESYT2_HUMAN2.628e-1628.28Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 ... [more]
ESYT1_PONAB5.855e-1630.69Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 ... [more]
ESYT1_HUMAN5.855e-1630.69Extended synaptotagmin-1 OS=Homo sapiens GN=ESYT1 ... [more]
EST2B_XENLA5.855e-1629.29Extended synaptotagmin-2-B OS=Xenopus laevis GN=es... [more]
EST2A_XENLA5.855e-1629.29Extended synaptotagmin-2-A OS=Xenopus laevis GN=es... [more]
ESYT3_MOUSE2.906e-1531.75Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 ... [more]
ESYT3_HUMAN3.795e-1531.22Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5G12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5G12-M23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077921 ID=CX077921; Name=CX077921; organism=Citrus sinensis; type=EST; length=757bp
TCAATACCCATCCAATTGAAAGATCTTCAAGTTTTTACTGTTATACGTGT
TATCTTCCAACTTGCTGAAGAGATACCCTGCATTTCTGCTGTTGTTGTTG
CTCTACTTTCTGAGCCAAAGCCAAGAATTGACTATACACTGAAGGCTGTT
GGTGGAAGCTTGACAGCCATTCCTGGAATTGCAGATATGATCGATGATAC
TGTGGATTCAATCATCACAGACATGCTTCAGTGGCCTCATAGAATTGTTG
TTCCGATTGGCGGTATACCTGTGGATACTAGTGAATTAGAGCTTAAACCT
CAGGGGAAGGTTGCAGTGACCATAGTGAAAGCGAATAATTTGAAGAACAT
GGAAATGATTGGGAAATCTGATCCATATGCTGTTGTGCATATCAAGCCGC
TATTCAAGGTTAAAACGAATGTCGTAGACAACAACCTGAATCCTGTTTGG
AATCAAACATTTGAGTTGATTGCAGAAGACAAAGAGACTCAGTCACTTAT
CTTTGAGGTTTTTGATAAGGACATTGGGCAAGATAAGAGATTGGGAATAG
TGAAACTGCCCTTGATTGATCTCGAAGCAGATACTCCAAAAGAGGCTGAA
TTGAGACTCCTACCGTCACTTGATATGCTGAAAATAAAAGATAAGAAGGA
CAGAGGAAGCATTACTGTATAGGTACTATATCATGAATTTAACAAGGAGG
AGCAGTTGTCTGCTCTAGAGGAAGAGAAGAGGTTCCTAGAAGAAAGGAAG
AAACTGA
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