CX077788

Overview
NameCX077788
Unique NameCX077788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.957e-110
Identity = 208/245 (84.90%), Postives = 219/245 (89.39%), Query Frame = -1
Query:  131 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPA 865
            SLR IQYELAWERCRQLQ+ED                    GLRGFVPFSQISSKS+AEELL K++PLKFVEVDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTL+SDGILGPL+ DLPA+GLDL+ + PA
Sbjct:  164 SLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408          
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 211.46 bits (537), Expect = 5.126e-54
Identity = 104/200 (52.00%), Postives = 146/200 (73.00%), Query Frame = -1
Query:  269 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 865
            S+R I+Y  AWER RQLQ+ED                    GLRGF+P S IS++   E+L+G++LPLKF+EVDE+++RLVLS+R+A+ + +  +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+  D ERGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA  +R+++ Q
Sbjct:   99 SIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298          
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.543e-50
Identity = 104/205 (50.73%), Postives = 145/205 (70.73%), Query Frame = -1
Query:  257 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ-RIAQAEAM 865
            S+R I+Y  AWER RQLQ+ED                    GLRGF+P S IS++   E+L+G+DLPLKF+EVDEE++RLVLS+R+A+ + +   L +  VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+  D ERGR+SLSTK+LEP PG M+++  LV E A+EMA+ FRQ R+A+A+ +
Sbjct:   98 SIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302          
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.190e-26
Identity = 66/198 (33.33%), Postives = 108/198 (54.55%), Query Frame = -1
Query:  275 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 865
            SLR +  E AW R  +LQ                       GLR F+P S ++ K   + L GK L + F+EV+    +LVLS R+A   +   ++ +G ++ G V  LKP+G F+D+GG   LL ++QIS   VAD+  + + GD ++ ++++ D  +GR+SLSTK LE  PG+++ N   +   A + A+  R+++
Sbjct:   95 SLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292          
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.428e-24
Identity = 62/143 (43.36%), Postives = 91/143 (63.64%), Query Frame = -1
Query:  344 LRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 739
            +RGFVP S ++ +  S   +   KD+  + +E+D   +RL+LS RKA+A  +         ++L +G VV GTV  L  +GAF+D+GG++GL+HVS+ISHDRV + A VL  GD + V IL+ D E+GR+SLS K  +  P D
Sbjct:  166 VRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWD 307          

HSP 2 Score: 78.1814 bits (191), Expect = 6.772e-14
Identity = 53/137 (38.69%), Postives = 81/137 (59.12%), Query Frame = -1
Query:  350 GFVPFSQISS---KSTAEELL-GKDLPLKFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 733
            G V  S+IS    K+ A+ L  G  + +K + +D E+ R+ LS     R    ++  Q+  GSV+ GTV+ +K +GAF++I  GI GL+HVSQIS+ R+ + + VL+ GD ++V +L       R+SLS K LE  P
Sbjct:  255 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391          
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.608e-23
Identity = 56/169 (33.14%), Postives = 101/169 (59.76%), Query Frame = -1
Query:  362 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 865
            S+R ++Y  AW+R RQL +ED                    G+ GFVP S + +   +E+   K + LK + V+E+ + L+LS+R+A+ + + + L +G+++ G +  + PYG FI +G + GL+H+S+I+   +  I++  + GDT+K +I+  D+++GR+SLS K L
Sbjct:   94 SIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKHL 262          
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.111e-23
Identity = 58/170 (34.12%), Postives = 100/170 (58.82%), Query Frame = -1
Query:  359 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 865
            S+R ++Y  AW+R RQL +ED                    G+ GFVP S +++ S       K + LK + V+E+ + L+LS+R+A+ A + + L +G+++ G +  + PYG FI  G + GL+H+S+I+  +V  I +  + GDT+K +I+  D+++GR+SLS K L+
Sbjct:   94 SIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263          
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.042e-22
Identity = 60/190 (31.58%), Postives = 100/190 (52.63%), Query Frame = -1
Query:  299 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 865
            S R +Q + +WE   +L+                       GLRGF+P S +  K   + L+G+ L    +E +++ ++LVL+ R+   A+S  ++  G++  G V  ++PYG F++I G+ GLLHVSQ+S  RV  + T+   G  + V +   D  + R+SLST+ LE  PG+++       EK +EM
Sbjct:   96 SRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPGELV-------EKFDEM 278          
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = -1
Query:  338 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 739
            +RGF+P S + +    +  +  GK L L  VE+D +++R++LS+R  +   QA         L +GSV+ G VQ L  +GAF+DIGGI+GL+H+SQ+SH  V   + V++ G  +KV +LS DR+  R+SLS K   P P + I
Sbjct:  123 VRGFIPASLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQI 266          

HSP 2 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 50/139 (35.97%), Postives = 77/139 (55.40%), Query Frame = -1
Query:  350 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 733
            G V  SQ+S           EE  G+++ +K + VD +  R+ LS +  +     Q+G     G V+ GTVQ L  +GAF++I  G+ GL+H+SQIS+  +     VL+ G T+KV +L  +    R+SLS ++LE TP
Sbjct:  212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348          
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1H_BACC1 (30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.505e-21
Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = -1
Query:  338 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 739
            +RGF+P S +      +  +  GK L +K VE+D E++R++LS++  +    DS+ +  I     G VV GTVQ L  +GAF+++GG++GL+H+SQISH+RV   + VL+ G  +KV +LS D +  R+SLS K  +P P + I
Sbjct:  124 VRGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENI 267          
The following BLAST results are available for this feature:
BLAST of CX077788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RR1_SPIOL2.957e-11084.9030S ribosomal protein S1, chloroplastic OS=Spinaci... [more]
RS1_SYNP65.126e-5452.0030S ribosomal protein S1 OS=Synechococcus sp. (str... [more]
RS1A_SYNY31.543e-5050.7330S ribosomal protein S1 homolog A OS=Synechocysti... [more]
RS1_SYNE71.190e-2633.3330S ribosomal protein S1 OS=Synechococcus elongatu... [more]
RS1_LEULA9.428e-2443.3640S ribosomal protein S1 OS=Leuconostoc lactis GN=... [more]
RR1_PORYE1.608e-2333.1430S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RR1_PORPU6.111e-2334.1230S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RS1B_SYNY31.042e-2231.5830S ribosomal protein S1 homolog B OS=Synechocysti... [more]
RS1H_BACSU6.757e-2240.2830S ribosomal protein S1 homolog OS=Bacillus subti... [more]
RS1H_BACC11.505e-2140.2830S ribosomal protein S1 homolog OS=Bacillus cereu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077788 ID=CX077788; Name=CX077788; organism=Citrus sinensis; type=EST; length=865bp
CTTTTTTTAGGAAAAAATTTGAAGTTGCATATTNTGGCTGGAAGTTTCAA
TCGCAGTAAATTTTACAAAATTAATAATATGTCTTGGGTTGCAAAAGATA
CAATACAACTGCTATTTAAGTTCAATCATCAGCTGGGGAAATGTCAGTCA
AATCTAATCCATCCGCCGGCAAGTCAGGTGAAAGTGGACCCAAGATCCCA
TCCGAGTTAAGAGTTAAGCCACTCTCAGGCTGGAATCTAAGCATGTCTGC
ACGAGCCATGGCTTCTGCTTGAGCAATTCTCTGCCTGAATGTTTGTGCCA
TCTCCTCAGCCTTCTCAAAAACAAGTTTTGGATTGCGAATCATGTCTCCA
GGGGTAGGTTCTAACTTCTTTGTTGAAAGACTGACACGGCCTCTCTCTCG
GTCATGGCTCAGTATCATGACCTTGAGAGTATCACCAGGTTGAAGCACTG
TAGCAATATCAGCCACACGATCGTGACTGATCTGACTGACATGAAGAAGA
CCATTGATTCCACCAATGTCAATGAAGGCACCATATGGTTTCAGGCTCTG
TACAGTACCAATGACCACTGATCCAATTCCTAGCTGTGCCTGGCTGTCAG
CCATGGCCTTGCGGTTACTTAGGACAAGCCTAGACTGTTCCTCATCAACC
TCCACAAACTTTAGAGGAAGATCTTTACCGAGAAGCTCTTCTGCAGTTGA
TTTCGATGATATCTGGGAGAAAGGGACAAATCCACGAAGGCCCTCCACCT
CAGCAACCACTCCACCTTTGTTTGCACCAACAACCTTACCCTTTACAACA
ACGTCCTCAGATTGCAGCTGCCTACATCTTTCCCAGGCAAGCTCGTACTG
GATCATCCGTAGGCT
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