CX077788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1) HSP 1 Score: 398.282 bits (1022), Expect = 2.957e-110 Identity = 208/245 (84.90%), Postives = 219/245 (89.39%), Query Frame = -1 Query: 131 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPA 865 SLR IQYELAWERCRQLQ+ED GLRGFVPFSQISSKS+AEELL K++PLKFVEVDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTL+SDGILGPL+ DLPA+GLDL+ + PA Sbjct: 164 SLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4) HSP 1 Score: 211.46 bits (537), Expect = 5.126e-54 Identity = 104/200 (52.00%), Postives = 146/200 (73.00%), Query Frame = -1 Query: 269 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 865 S+R I+Y AWER RQLQ+ED GLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D ERGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA +R+++ Q Sbjct: 99 SIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.543e-50 Identity = 104/205 (50.73%), Postives = 145/205 (70.73%), Query Frame = -1 Query: 257 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ-RIAQAEAM 865 S+R I+Y AWER RQLQ+ED GLRGF+P S IS++ E+L+G+DLPLKF+EVDEE++RLVLS+R+A+ + + L + VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVMI+ D ERGR+SLSTK+LEP PG M+++ LV E A+EMA+ FRQ R+A+A+ + Sbjct: 98 SIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.190e-26 Identity = 66/198 (33.33%), Postives = 108/198 (54.55%), Query Frame = -1 Query: 275 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 865 SLR + E AW R +LQ GLR F+P S ++ K + L GK L + F+EV+ +LVLS R+A + ++ +G ++ G V LKP+G F+D+GG LL ++QIS VAD+ + + GD ++ ++++ D +GR+SLSTK LE PG+++ N + A + A+ R+++ Sbjct: 95 SLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 9.428e-24 Identity = 62/143 (43.36%), Postives = 91/143 (63.64%), Query Frame = -1 Query: 344 LRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 739 +RGFVP S ++ + S + KD+ + +E+D +RL+LS RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV + A VL GD + V IL+ D E+GR+SLS K + P D Sbjct: 166 VRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWD 307 HSP 2 Score: 78.1814 bits (191), Expect = 6.772e-14 Identity = 53/137 (38.69%), Postives = 81/137 (59.12%), Query Frame = -1 Query: 350 GFVPFSQISS---KSTAEELL-GKDLPLKFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 733 G V S+IS K+ A+ L G + +K + +D E+ R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL+HVSQIS+ R+ + + VL+ GD ++V +L R+SLS K LE P Sbjct: 255 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.608e-23 Identity = 56/169 (33.14%), Postives = 101/169 (59.76%), Query Frame = -1 Query: 362 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 865 S+R ++Y AW+R RQL +ED G+ GFVP S + + +E+ K + LK + V+E+ + L+LS+R+A+ + + + L +G+++ G + + PYG FI +G + GL+H+S+I+ + I++ + GDT+K +I+ D+++GR+SLS K L Sbjct: 94 SIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKHL 262
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 6.111e-23 Identity = 58/170 (34.12%), Postives = 100/170 (58.82%), Query Frame = -1 Query: 359 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 865 S+R ++Y AW+R RQL +ED G+ GFVP S +++ S K + LK + V+E+ + L+LS+R+A+ A + + L +G+++ G + + PYG FI G + GL+H+S+I+ +V I + + GDT+K +I+ D+++GR+SLS K L+ Sbjct: 94 SIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.042e-22 Identity = 60/190 (31.58%), Postives = 100/190 (52.63%), Query Frame = -1 Query: 299 SLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 865 S R +Q + +WE +L+ GLRGF+P S + K + L+G+ L +E +++ ++LVL+ R+ A+S ++ G++ G V ++PYG F++I G+ GLLHVSQ+S RV + T+ G + V + D + R+SLST+ LE PG+++ EK +EM Sbjct: 96 SRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPGELV-------EKFDEM 278
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22 Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = -1 Query: 338 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 739 +RGF+P S + + + + GK L L VE+D +++R++LS+R + QA L +GSV+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV +LS DR+ R+SLS K P P + I Sbjct: 123 VRGFIPASLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQI 266 HSP 2 Score: 77.7962 bits (190), Expect = 8.845e-14 Identity = 50/139 (35.97%), Postives = 77/139 (55.40%), Query Frame = -1 Query: 350 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 733 G V SQ+S EE G+++ +K + VD + R+ LS + + Q+G G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV +L + R+SLS ++LE TP Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETP 348
BLAST of CX077788 vs. ExPASy Swiss-Prot
Match: RS1H_BACC1 (30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC 10987) GN=BCE_1625 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.505e-21 Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = -1 Query: 338 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 739 +RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV +LS D + R+SLS K +P P + I Sbjct: 124 VRGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENI 267 The following BLAST results are available for this feature:
BLAST of CX077788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX077788 ID=CX077788; Name=CX077788; organism=Citrus sinensis; type=EST; length=865bpback to top |