DR406095

Overview
NameDR406095
Unique NameDR406095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6311 contig Csv1_Contig6311:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406095 vs. ExPASy Swiss-Prot
Match: NDUS4_RAT (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 43/90 (47.78%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  215 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 484
            F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A AFAEKHGW Y V     P  K KSYG NF W
Sbjct:   80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166          
BLAST of DR406095 vs. ExPASy Swiss-Prot
Match: NDUS4_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  215 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 484
            F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A AFAEK+GW Y V +   P  K KSYG NF W
Sbjct:   80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166          
BLAST of DR406095 vs. ExPASy Swiss-Prot
Match: NDUS4_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  215 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 484
            F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A AFAEK+GW Y V +   P  K KSYG NF W
Sbjct:   80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNL---VLTFSTKEDAVAFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166          
BLAST of DR406095 vs. ExPASy Swiss-Prot
Match: NDUS4_GECJA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  215 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 484
            F  AR   Q G     KW + F + ++WENPLMGW+ST DP +N+    L F ++  A AFAEK+GW + V +   P  K KSYG NF W
Sbjct:   80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNL---VLTFSTKEDAVAFAEKNGWSFDVEERKVPKPKSKSYGANFSW 166          
BLAST of DR406095 vs. ExPASy Swiss-Prot
Match: NDUS4_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  215 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 484
            F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A +FAEK+GW Y + +   P  K KSYG NF W
Sbjct:   80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166          
BLAST of DR406095 vs. ExPASy Swiss-Prot
Match: NDUS4_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  215 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 484
            F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A +FAEK+GW Y + +   P  K KSYG NF W
Sbjct:   80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166          
BLAST of DR406095 vs. ExPASy Swiss-Prot
Match: NDUS4_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  215 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 484
            F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A +FAEK+GW Y V +   P  K KSYG NF W
Sbjct:   80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166          
BLAST of DR406095 vs. ExPASy Swiss-Prot
Match: NDUS4_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  215 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 484
            F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A +FAEK+GW Y V +   P  K KSYG NF W
Sbjct:   80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166          
BLAST of DR406095 vs. ExPASy Swiss-Prot
Match: NDUS4_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  215 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 484
            F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L   ++  A +FAEK+GW Y + +   P  K KSYG NF W
Sbjct:   80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTXSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166          
The following BLAST results are available for this feature:
BLAST of DR406095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NDUS4_RAT7.559e-1747.78NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_MOUSE2.199e-1646.67NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_BOVIN2.199e-1646.67NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_GECJA4.899e-1645.56NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_HUMAN6.399e-1644.44NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_GORGO6.399e-1644.44NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_PONPY8.357e-1645.56NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_PONAB8.357e-1645.56NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_PANTR4.148e-1543.33NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248L07 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248L07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406095 ID=DR406095; Name=DR406095; organism=Citrus sinensis; type=EST; length=685bp
GCCGGGGGAATTAACTAATTGATCACCAAAAAAAGGAANNNAATNNNNAG
CTTTCTACGACGAGCGTGAGTCCGAGAATCATCAGCTTTGCTTAGTTCAA
GAAGGAGGAGACGGTTCTCTTCAAAAGCAGAGGATTCCTTGGTCGAGCAC
AAGCCCGGTGAAGTCGGAATGCTCTCTGGAATCCCAGAACAACATCTTTG
ACGACGGGTCATCATTTACTCACGCACGGACTGCAAGTCAACAAGGATCC
GGGAAAGTTGGCAAATGGTTTATTAATTTTCTGTCAACTCAGAAATGGGA
AAATCCTTTGATGGGTTGGACATCCACAGGGGACCCGTACGCCAATGTTG
GTGAGGCAGGTCTCTGTTTTGATAGTGAAGCGGCTGCTAGGGCATTTGCT
GAAAAACACGGCTGGGAGTATACGGTGAGGAAGTTTCATGCACCTCTTCT
AAAGCCCAAGTCGTATGGTGACAACTTCAAGTGGAAGGGCCCCCCGAAGG
ATGACTGAACTGCGTGATCGTGATTTGTACGAAGGCAAGCTTGTTTATGA
GATACAAGTAGACATATCCTGTAACCCTGTTGTAATTTAACATTGTATTA
ATTATCCAGCTGTAATTTACCAGTGTAGAAATTATCCAATCGCATTTTTT
TCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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