DR405270

Overview
NameDR405270
Unique NameDR405270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7518 contig Csv1_Contig7518:29..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_RAT (26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64
Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2
Query:    8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649
            E  R +    +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY L
Sbjct:  585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821          
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_PONAB (26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64
Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2
Query:    8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649
            E  R +    +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY L
Sbjct:  585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821          
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_MOUSE (26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64
Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2
Query:    8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649
            E  R +    +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY L
Sbjct:  585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821          
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_HUMAN (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64
Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2
Query:    8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649
            E  R +    +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY L
Sbjct:  585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821          
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_BOVIN (26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64
Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2
Query:    8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649
            E  R +    +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY L
Sbjct:  585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821          
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_DICDI (26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.140e-62
Identity = 118/208 (56.73%), Postives = 157/208 (75.48%), Query Frame = 2
Query:   20 KYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLY 643
            +Y  +T+ +CAYAGTGNVLKVQN+L  C+   E    + G AVL IA++AM EELG +M +R  +HLLQ G  +I+RA+PLALGLL  SNP++ +MD LS+LSHD D EVA  A++SLGLIG+GTNNARI GMLR L+ +Y KD +L F VRIAQGL+H+GKG +T+NPYHSDR L+SP A+ G++  L A LD+K ++  + HY+ +
Sbjct:  591 EYARLTVEACAYAGTGNVLKVQNMLHFCSDGQEN--PHHGLAVLSIALIAMGEELGSDMCLRMFDHLLQKGNVHIKRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPEVAQGAILSLGLIGAGTNNARIGGMLRALAVFYGKDVHLFF-VRIAQGLLHLGKGTMTINPYHSDRTLMSPVAVGGLLALLHAGLDIKNILSTQSHYLFF 795          
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: RPN1_NEUCR (26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 3.918e-60
Identity = 114/207 (55.07%), Postives = 153/207 (73.91%), Query Frame = 2
Query:   47 CAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGP------AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649
            CA+AGTG VLK+Q LL  C +H E GE  +G       AVLGI ++AM E++G EM +R   HL+ YGE NIRRAVPLA+GL+  SNP++ V DTLSR SHD D+EVA+ A+ ++GL+G+GTNNAR+A +LR L+SYY++D   LF VRIAQGL+HMGKG L+++P+H+DR +LS  A AG++  L A +D K  I  K HY+LY++
Sbjct:  607 CAWAGTGAVLKIQELLHICNEHIEDGEEKKGEELLQAYAVLGIGLIAMGEDVGQEMVLRHFGHLMHYGEANIRRAVPLAMGLISPSNPQMKVYDTLSRYSHDNDNEVAINAIFAMGLLGAGTNNARLAQLLRQLASYYHRDQESLFMVRIAQGLLHMGKGTLSVSPFHTDRQVLSNVATAGLLAVLVAMIDAKQFITSKSHYLLYWI 813          
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: RPN1_SCHPO (26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 9.032e-57
Identity = 106/220 (48.18%), Postives = 155/220 (70.45%), Query Frame = 2
Query:   11 KIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQH-----HEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLCL 655
            KI +   + +  C+YAGTGNVL +Q LL  C++       E     Q  A LG+A +AM E++G EM +R  +H++ YGE +IR+A+PLALGLL  SNP++ + DTLSR SHD D +VA  A+ ++GL+G+GT+NAR+A +LR L+SYY+K++N LF VRIAQGL+++GKG +TLNPYH++R +L  TA AG++T + A LD    ++   H++LY + L
Sbjct:  585 KIARQAEILVDICSYAGTGNVLHIQKLLHICSEPPSDDAKESETTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMHYGEPSIRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITL 804          
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: RPN1_YEAST (26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.003e-39
Identity = 77/169 (45.56%), Postives = 123/169 (72.78%), Query Frame = 2
Query:  143 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649
            AVLGIA++A+ E++G EM++R   HL+ YG ++IRR VPLA+G++ +S+P++ V DTL+R SHD D EV+M ++ ++GL G+GTNNAR+A +LR L+SYY ++ + LF  R+AQGL+H+GKG +T++ + +D  +L+   LA I+TT    +    ++  K+H + Y L
Sbjct:  739 AVLGIALIALGEDIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGIVSVSDPQMKVFDTLTRFSHDADLEVSMNSIFAMGLCGAGTNNARLAQLLRQLASYYSREQDALFITRLAQGLLHLGKGTMTMDVF-NDAHVLNKVTLASILTTAVGLVSPSFML--KHHQLFYML 904          
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: RPN1_CANGA (26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.812e-39
Identity = 76/169 (44.97%), Postives = 121/169 (71.60%), Query Frame = 2
Query:  143 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649
            AV+GIA++ M EE+G EM++R   HL+ YG ++IRR VPLA+GL+ +++P++ V DTL+R SHD D +V+M ++ ++GL G GTNNAR+A +LR L+SYY ++ + LF  R+AQGLVH+GKG +T++ + +D  +L+   LA ++T L   +    ++  K+H + Y L
Sbjct:  729 AVIGIALITMGEEIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGLVSVADPQMKVFDTLTRFSHDPDLDVSMNSIFAMGLCGVGTNNARLAQLLRQLASYYSREQDALFITRLAQGLVHLGKGTMTMDIF-NDAHVLNKVTLASLLTVLVGLISPSFIL--KHHQLFYML 894          
The following BLAST results are available for this feature:
BLAST of DR405270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSMD2_RAT3.424e-6451.9026S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_PONAB3.424e-6451.9026S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_MOUSE3.424e-6451.9026S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_HUMAN3.424e-6451.9026S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_BOVIN3.424e-6451.9026S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_DICDI7.140e-6256.7326S proteasome non-ATPase regulatory subunit 2 OS=... [more]
RPN1_NEUCR3.918e-6055.0726S proteasome regulatory subunit rpn-1 OS=Neurosp... [more]
RPN1_SCHPO9.032e-5748.1826S proteasome regulatory subunit rpn1 OS=Schizosa... [more]
RPN1_YEAST1.003e-3945.5626S proteasome regulatory subunit RPN1 OS=Saccharo... [more]
RPN1_CANGA3.812e-3944.9726S proteasome regulatory subunit RPN1 OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O24 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405270 ID=DR405270; Name=DR405270; organism=Citrus sinensis; type=EST; length=656bp
GGCCGGGGAAAAGATCAGGAAATATTNNNNTATGACACTGCTCTCTTGTG
CATATGCTGGAACTGGGAATGTCCTCAAGGTTCAAAATCTTTTGGGTCAT
TGTGCACAGCATCATGAGAAAGGTGAAGCCTACCAAGGACCTGCTGTGCT
TGGAATTGCTATGGTAGCTATGGCTGAAGAATTGGGTCTTGAGATGGCAA
TTCGATCATTAGAGCACCTTTTGCAGTATGGAGAGCAGAACATTCGTCGT
GCAGTTCCGTTGGCTCTTGGTCTCCTATGTATATCAAACCCAAAGGTTAA
TGTTATGGACACATTAAGCCGGCTAAGCCATGATACTGATTCAGAAGTAG
CTATGGCTGCCGTTATATCATTGGGTTTGATAGGGTCGGGAACGAACAAT
GCTAGAATAGCTGGCATGCTTCGCAATCTCTCAAGCTACTACTACAAAGA
TGCCAATCTTCTGTTTTGTGTCCGAATTGCTCAAGGATTAGTGCACATGG
GAAAGGGTCTCTTGACCCTTAACCCATACCATTCTGATCGCTTCTTGCTA
TCACCGACTGCTCTTGCTGGTATAGTTACCACTCTTTTTGCATGTCTAGA
CATGAAGGCAGTCATCGTGGGGAAATATCATTATGTTCTATACTTCCTTT
GTCTTG
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