DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.221e-37
Identity = 81/175 (46.29%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK----KSSN 669
            K+FIGGL  DTT     ++FGKYG +TD  IMKD  TG+ RGFGF+++  PS VD+V++  HI++GK ++ KR IP+     +  KT KIFVGGI   V   E + FFS++G +++ Q++ D +T +SRGFGFV +DS + VD  + +   ID    ++EIK+AEP+    KSSN
Sbjct:  160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR-VCQNKFIDFKDRKIEIKRAEPRHMQQKSSN 329          

HSP 2 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHI-INGKQVEIKRTIPK 387
            GKIF+GG+  D     F + F ++G I D+ +M D+ TGQ RGFGF+TY     VD+V ++  I    +++EIKR  P+
Sbjct:  243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321          

HSP 3 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 34/100 (34.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  358 QVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            Q ++ +T  + S      ++ K+F+GG+    +ED L+ +F KYG V + +I++D  T RSRGFGF+ F+    VDE++   +++D  G  ++ K+A P+
Sbjct:  139 QQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD--GKVIDPKRAIPR 236          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.219e-35
Identity = 73/172 (42.44%), Postives = 119/172 (69.19%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSS 666
            GK+F+GGL  +TT    +++F ++GDI D V+MK+  +G+ RGFGF+T+ADP+ V+ V+++  H ++G+ ++ K   P+   + K     K+F+GG+PS+V+E +L+ FF++YGKV E  I+ D E  +SRGFGF+ F+ E  V+ + ++   I++ G QVEIKKAEP+  S
Sbjct:    7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE-RYINLNGKQVEIKKAEPRDGS 177          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.219e-35
Identity = 77/192 (40.10%), Postives = 128/192 (66.67%), Query Frame = 1
Query:  100 MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNP 672
            +G  S S+ P+      PGK+FIGGL   T+  +   +FG+YGDI+++++MKD  T + RGFGF+T++DP+ VDKV+ + TH ++GK+V+ K   P+ +      +TKKIFVGG+ +  + +++K++F ++G + +  ++ D +TNR RGFGFV F SE+VVD+ + + +  ++    VE KKA+PK+   P
Sbjct:   16 LGPCSPSEVPN-----DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK-VCEIHFHEINNKMVECKKAQPKEVMLP 201          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.546e-35
Identity = 74/192 (38.54%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  103 GSKSKSDNPHTGDGASP-----GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 663
            GS +   N    +  SP     GK+FIGGL  +TT  +   +F ++G++ D  +M+D  TG+ RGFGF+T+ +P  V++V+   H ++GK ++ KR IP+     +  KT K+FVGG+P   +E+E +NFF+++G+VL+  ++ D +T R RGFGFV +++E  V+  +S+   I + G  VE+K+A PK S
Sbjct:  141 GSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ-PYITIHGKPVEVKRATPKAS 327          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.032e-34
Identity = 76/190 (40.00%), Postives = 112/190 (58.95%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------SGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPPP 678
            GK+F+GGL   TT  T   +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V  V+    H ++G+ ++ K   P+G                +S   K+ KIFVGGIP +  E EL+ +F K+G V E  +I D E  R RGFGF+ F+ E+ VD+ ++  +  D+ G +VE+K+AEP+ S N  P
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKNQAP 198          

HSP 2 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  139 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGS 393
            D +   KIF+GG+P +       ++F K+G +T+ V++ D    +PRGFGFIT+ D   VD+ +    H I GK+VE+KR  P+ S
Sbjct:  108 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 193          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.001e-34
Identity = 75/190 (39.47%), Postives = 113/190 (59.47%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------SGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPPP 678
            GK+F+GGL   TT  T   +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V  V+    H ++G+ ++ K   P+G                +S + K+ KIFVGGIP +  E EL+ +F K+G V E  +I D E  R RGFGF+ F+ E+ VD+ ++  +  D+ G +VE+K+AEP+ S +  P
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAP 198          

HSP 2 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  139 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGS 393
            D +   KIF+GG+P +       ++F K+G +T+ V++ D    +PRGFGFIT+ D   VD+ +    H I GK+VE+KR  P+ S
Sbjct:  108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 193          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.687e-34
Identity = 74/195 (37.95%), Postives = 116/195 (59.49%), Query Frame = 1
Query:  142 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKG---------------SGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPPP 678
            G   GK+F+GGL   TT  T   +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V  V+    H ++G+ ++ K   P+G                 ++++ ++ KIFVGGIP +  E ELK +F+++G V E  +I D E  R RGFGF+ F+ E+ VD+ ++  +  D+ G +VE+K+AEP+ S +  P
Sbjct:    6 GDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQTP 199          

HSP 2 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  127 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGS 393
            P T +  S  KIF+GG+P +       ++F ++G +T+ V++ D    +PRGFGFIT+ D   VD+ +    H I GK+VE+KR  P+ S
Sbjct:  106 PRTENSRS-NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 194          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.393e-33
Identity = 74/191 (38.74%), Postives = 121/191 (63.35%), Query Frame = 1
Query:  106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPP 675
            S S +D+ H      PGK+FIGGL   T+  +   +F K+G+I + ++M+D  T + RGFGF+T+ADP+ VDKV+ +  H ++ K ++ K   P+ +      +TKKIFVGG+ ++   +++K +F ++GKV +  ++ D  TNR RGFGFV F++E+VV E + + +  ++    VE KKA+PK+   PP
Sbjct:   10 SGSANDSQH-----DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVV-EKVCEIHFHEINNKMVECKKAQPKEVMFPP 194          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.393e-33
Identity = 74/191 (38.74%), Postives = 121/191 (63.35%), Query Frame = 1
Query:  106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPP 675
            S S +D+ H      PGK+FIGGL   T+  +   +F K+G+I + ++M+D  T + RGFGF+T+ADP+ VDKV+ +  H ++ K ++ K   P+ +      +TKKIFVGG+ ++   +++K +F ++GKV +  ++ D  TNR RGFGFV F++E+VV E + + +  ++    VE KKA+PK+   PP
Sbjct:   10 SGSANDSQH-----DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVV-EKVCEIHFHEINNKMVECKKAQPKEVMFPP 194          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 69/185 (37.30%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  121 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNP 672
            D+PH      P K+FIGGL   TT     ++FG++G++ + ++M+D  T + RGFGF+T+ D + VDKV+ +  H ++ K ++ K   P+ +      +TKKIFVGG+  + + +++K++F ++GKV +  ++ D  TNR RGFGFV F+SE++V E + + +  ++    VE KKA+PK+  +P
Sbjct:   14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV-EKVCEIHFHEINNKMVECKKAQPKEVMSP 192          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
HRP1_YEAST2.221e-3746.29Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
RB27C_DROME1.219e-3542.44Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
MSIR6_DROME1.219e-3540.10RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
YHKF_SCHPO3.546e-3538.54Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
DAZP1_MOUSE1.032e-3440.00DAZ-associated protein 1 OS=Mus musculus GN=Dazap1... [more]
DAZP1_HUMAN3.001e-3439.47DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]
DAZP1_XENLA6.687e-3437.95DAZ-associated protein 1 OS=Xenopus laevis GN=daza... [more]
MSI2H_MOUSE7.393e-3338.74RNA-binding protein Musashi homolog 2 OS=Mus muscu... [more]
MSI2H_HUMAN7.393e-3338.74RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
MSI1H_RAT1.821e-3137.30RNA-binding protein Musashi homolog 1 OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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