CX070309

Overview
NameCX070309
Unique NameCX070309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13502 contig Csv1_Contig13502:370..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX070309 vs. ExPASy Swiss-Prot
Match: RPAB4_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = -1 
Query:  241 LETAMDPQP---EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 405
            ++T  D QP   +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct:    1 MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
[Close]
BLAST of CX070309 vs. ExPASy Swiss-Prot
Match: RPAB4_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = -1 
Query:  241 LETAMDPQP---EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 405
            ++T  D QP   +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct:    1 MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
[Close]
BLAST of CX070309 vs. ExPASy Swiss-Prot
Match: RPAB4_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.141e-13
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = -1 
Query:  241 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 387
            P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct:   10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
[Close]
BLAST of CX070309 vs. ExPASy Swiss-Prot
Match: RPAB4_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe GN=rpc10 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.814e-12
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = -1 
Query:  241 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 387
            P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct:   15 PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63
The following BLAST results are available for this feature:
BLAST of CX070309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RPAB4_HUMAN4.773e-1355.17DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB4_BOVIN4.773e-1355.17DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB4_MOUSE8.141e-1359.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB4_SCHPO1.814e-1255.10DNA-directed RNA polymerases I, II, and III subuni... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_16A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16A07-B14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070309 ID=CX070309; Name=CX070309; organism=Citrus sinensis; type=EST; length=423bp
TTTTTTAACACAACAAGCTTTCTATTTTTGCAGTTTATATCTAATCTCAA
TTAAGTTTTAGGAACAATATGTGCCCGAGACACAACATACTTGCATCATG
GAATGGTCATTACAGCTATTCTACAAATCACCACACAAACCACAGTGAAA
ACTGCTGAGAAGCTACAACGAAACTGGCAGTTTGCAAGACAGCTGGTTAT
GCTTCATAGGCATTGGCTCTCCACCCACATCTCCCCATTAACGTGCCTCA
TATTGAACAATTCGGCGGGTGCGCTTCTTGTACAAGATACGGTAACCGCA
TTCACGGCACTGGATGACGTCACCTGGCTTAAGCGTGTTCTCCATTCCAC
AATCTCCACAGATGTAGCTGACTGGCTCTGGCTGAGGATCCATTGCGGTT
TCGAGGTTCAAGAGCTTCCCAAA
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