CX070143

Overview
NameCX070143
Unique NameCX070143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070143_ssr611 microsatellite CX070143_ssr611:611..622. BLAST: Citrus ESTs to Prunus persica proteins V1
CX070143_ssr684 microsatellite CX070143_ssr684:684..695. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11695 contig Csv1_Contig11695:561..1316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.778e-26
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = -1
Query:    1 NANKAKMWEEEQDT---GGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 231
            ++ K+K+WEE+++     GMDELL VLGYKV+SS+MADVAQKLEQLEM MGT  EDGI+HL+TDTVH NPSD++GWVQSM
Sbjct:   22 SSGKSKIWEEDEEEKPDAGMDELLAVLGYKVKSSDMADVAQKLEQLEMAMGTTMEDGITHLSTDTVHKNPSDMAGWVQSM 101          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.064e-25
Identity = 64/103 (62.14%), Postives = 73/103 (70.87%), Query Frame = -1
Query:    1 MKRDHQHXXXXXXXXXXXXXXXSTGNANKAKMWEEEQDTGGMD-ELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 306
            MKRDHQ                   ++ K K+WEE+ D GGMD ELL VLGYKVRSS+MADVAQKLE LE VMGTAQEDGIS L  DTVH+NPSD+SGWVQ++
Sbjct:    1 MKRDHQEISGSGSNPAE-------SSSIKGKLWEEDPDAGGMDDELLAVLGYKVRSSDMADVAQKLEMLEKVMGTAQEDGISQLG-DTVHFNPSDLSGWVQNL 95          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.472e-24
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = -1
Query:    1 NANKAKMWEEE-QDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 231
            N  KAK+WEEE Q  GGMDELL VLGYKV+SS+MA+VAQKLEQLE  M   Q+ G+SHLA DTVHYNPSD+S WV+SM
Sbjct:   28 NTGKAKLWEEEVQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWVESM 105          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.699e-23
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = -1
Query:    1 MKRDHQHXXXXXXXXXXXXXXXSTGNANKAKMW--EEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 306
            MKRD                  +TG+++K KM   +EE+D G MDELL VLGYKVRSSEMA+VA KLEQLE +MG  QEDG+S+LATDTVHYNPS++  W+ +M
Sbjct:    1 MKRDLHQFQGPPDTRFPNHGTANTGSSSKDKMMMVKEEEDGGNMDELLAVLGYKVRSSEMAEVALKLEQLETMMGNVQEDGLSNLATDTVHYNPSELYSWLDNM 104          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.699e-23
Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = -1
Query:    1 MKRDHQHXXXXXXXXXXXXXXXSTG--NANKAKMWEEE-QDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 306
            MKR+H H                    N  KAK+WEE+ Q  GGMDELL VLGYKV+SS+MA+VAQKLEQLE  M   Q+ G+SHLA DTVHYNPSD+S W++SM
Sbjct:    1 MKREHHHLHPRPDPPSMAAAPNGDTYLNTGKAKLWEEDAQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESM 105          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22
Identity = 56/102 (54.90%), Postives = 64/102 (62.75%), Query Frame = -1
Query:    1 MKRDHQHXXXXXXXXXXXXXXXSTGNANKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 306
            MKRDH H                     K  M  EE D  GMDELL VLGYKVRSSEMADVAQKLEQLE++M   QED +S LAT+TVHYNP+++  W+ SM
Sbjct:    1 MKRDHHHHHHQD---------------KKTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETVHYNPAELYTWLDSM 87          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = -1
Query:    1 TGNANKAKMWEEE-QDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 237
            T    K KMW+ + Q   GMDELL VLGY V++S+MA+VAQKLEQLE V+  AQEDG+SHLA++TVHYNPSD+S W+ SM
Sbjct:   15 TSPTGKGKMWDADPQQDAGMDELLAVLGYNVKASDMAEVAQKLEQLEEVIVNAQEDGLSHLASETVHYNPSDLSNWLGSM 94          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = -1
Query:    1 MKRDHQHXXXXXXXXXXXXXXXSTGNANKAKMWEEEQDTGGM--DELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 306
            MKRDH H               S+ + +K  M ++E+D GG   DELL VLGYKVRSSEMA+VA KLEQLE +M   QEDG+SHLATDTVHYNPS++  W+ +M
Sbjct:    1 MKRDH-HQFQGRLSNHGTSSSSSSISKDKMMMVKKEEDGGGNMDDELLAVLGYKVRSSEMAEVALKLEQLETMMSNVQEDGLSHLATDTVHYNPSELYSWLDNM 103          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.918e-20
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = -1
Query:    1 NKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 225
            +K  M +EE+D    DELL VLGYKVRSSEMA+VA KLEQLE +MG AQEDG++HLATDTVHYNP+++  W+ +M
Sbjct:   31 DKMMMVKEEED----DELLGVLGYKVRSSEMAEVALKLEQLETMMGNAQEDGLAHLATDTVHYNPAELYSWLDNM 101          
BLAST of CX070143 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.728e-20
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = -1
Query:    1 MKRDHQHXXXXXXXXXXXXXXXSTGNANKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSM 306
            MKR+H H                 G+++   + +EE    G+DELL VLGYKVRSS+MADVA KLEQLEMV+G    DGIS+L+ +TVHYNPSD+SGWV+SM
Sbjct:    1 MKREHNHRESSAGEG---------GSSSMTTVIKEE--AAGVDELLVVLGYKVRSSDMADVAHKLEQLEMVLG----DGISNLSDETVHYNPSDLSGWVESM 87          
The following BLAST results are available for this feature:
BLAST of CX070143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GAI_SOLLC4.778e-2670.00DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
GAI_GOSHI1.064e-2562.14DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
GAIP_CUCMA4.472e-2471.79DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
RGA2_BRACM1.699e-2355.77DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
GAIPB_CUCMA1.699e-2356.19DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
GAI_ARATH3.205e-2254.90DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
GAI1_VITVI4.186e-2263.75DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
RGA_ARATH3.544e-2154.81DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
RGA1_BRACM3.918e-2065.33DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
RGL1_ARATH8.728e-2053.92DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_15A06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15A06-B11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070143 ID=CX070143; Name=CX070143; organism=Citrus sinensis; type=EST; length=756bp
CATGCTCTGAACCCAGCCCGAAACATCAGATGGGTTGTAGTGAACAGTGT
CAGTGGCAAGATGGGAAATTCCGTCTTCTTGAGCAGTGCCCATCACCATC
TCCAGCTGTTCAAGCTTCTGAGCAACATCAGCCATCTCTGAAGATCGTAC
TTTGTAACCCAAAACTTCCAATAACTCGTCCATGCCGCCAGTGTCTTGCT
CTTCCTCCCACATCTTTGCCTTATTTGCATTTCCCGTTGACGACGAATAA
TCGCCTTTTCCACTTCCACTACCGCCACCGTAACTATGTTGGTGATCTCT
CTTCATGATGATGAGATTTTTCCTTTTTTTTTCTTCTCTTCTTTTTGTTG
AGGGTTCTCTTTTGTTGGGTTCTTTGATTCTGAAAGAAAAAGAAGAGGAG
TAGAGGAAAGATACTAGAATTTGGCCACGAGAGGGAAGTGGGGGCTTATA
TTGGAGAAAATTTTTGCATTTTTTGAAAAGATTTTTAGGAGGAAATGATG
AAAGAAAAGGAATGTTATGGGTGGGAGGTCCAATGAAGCAACAGGGAGGG
TTGCGAGTGGAAGAGATAAGGAACAACGAAGGCCATAATAATGGGACTTT
ATTTTATTTGTATTATTATTATTTTTAAAAATTTGTTTTTGGGTTATGAA
GTTACGTTAATATATTTTAAATTTTTTTTTTTGTAAATAAATAAAGAAAA
GGTGGTTTGTGAAAATTAGCTCCGGCAAGCATTTAAAAGCATCATCAAAA
GAGCCG
back to top