CX069994
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069994 vs. ExPASy Swiss-Prot
Match: POL2_MOUSE (Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.257e-24 Identity = 84/255 (32.94%), Postives = 128/255 (50.20%), Query Frame = -1 Query: 26 HILNSQGTIAPLNHTYIALISKIGKPRK----VIDFRPISLYNVIYRIVAKSVANIFKQILLKIISPLQSAFIPNRLITDNIIVGCECLHKIRHCKGKRNGLIALKLDVSKAYDRLEWNFLEQTLKQLGFSHQWISLIMRCISSVSFSVLINGAVKGLIKPQRGLRQGCPLSPYLFITCAEAFSSLLQQAEQQRLIHGLSFG-NDLKISHLLFADDSLVFSRASMVDCRNLKMILECYSTASGQIFNFEKSSLFL 775 H + +GT+ N Y A I+ I KP+K + +FRPISL N+ +I+ K +AN ++ + II P Q FIP NI +H I K K + +I+L D KA+D+++ F+ + L++ G ++++I S ++ +NG I + G RQGCPLSPYLF E L + QQ+ I G+ G ++KIS L ADD +V+ R L ++ + G N KS FL Sbjct: 504 HKIEVEGTLP--NSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISL--DAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEV---LARAIRQQKEIKGIQIGKEEVKIS--LLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFL 749
BLAST of CX069994 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=4 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.642e-24 Identity = 78/240 (32.50%), Postives = 128/240 (53.33%), Query Frame = -1 Query: 14 IALISKIGKPRKVIDFRPISLYNVIYRIVAKSVANIFKQILLKIISPLQSAFIPNRLITDNIIVGCECLHKIRHCKGKRNGLIA--LKLDVSKAYDRLEWNFLEQTLKQLGFSHQWISLIMRCISSVSFSVLINGAVKGLIKPQRGLRQGCPLSPYLFITCAEAFSSLLQQAEQQRLIHGLSFGNDLKISHLLFADDSLVFSRASMVDCRNLKMILECYSTASGQIFNFEKSSLFLSGNV 727 ++L+ K G R + ++RP+SL + Y+IVAK+++ K +L ++I P QS +P R I DN+ + + LH R R GL L LD KA+DR++ +L TL+ F Q++ + +S V IN ++ + RG+RQGCPLS L+ E F LL ++RL + D+++ +ADD ++ ++ +VD + E Y+ AS N+ KSS L G++ Sbjct: 510 LSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFAR-----RTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLL----RKRLTGLVLKEPDMRVVLSAYADDVILVAQ-DLVDLERAQECQEVYAAASSARINWSKSSGLLEGSL 739
BLAST of CX069994 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23 Identity = 76/238 (31.93%), Postives = 121/238 (50.84%), Query Frame = -1 Query: 17 IALISKIGK-PRKVIDFRPISLYNVIYRIVAKSVANIFKQILLKIISPLQSAFIPNRLITDNIIVGCECLHKIRHCKGKRNGLIALKLDVSKAYDRLEWNFLEQTLKQLGFSHQWISLIMRCISSVSFSVLINGAVKGLIKPQRGLRQGCPLSPYLFITCAEAFSSLLQQAEQQRLIHGLSFGNDLKISHLLFADDSLVFSRASMVDCRNLKMILECYSTASGQIFNFEKSSLFLSGN 727 I LI K GK P + ++RPISL N+ +I+ K + N +Q + KII Q FIP NI + I K K + + L +D KA+D ++ F+ +TLK++G ++ LI S + ++++NG + G RQGCPLSP LF E + ++ +++ I G+ G++ +I LFADD +V+ + L +++ YS SG N KS F+ N Sbjct: 513 ITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNKDH--MILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIR---EEKAIKGIHIGSE-EIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTN 744
BLAST of CX069994 vs. ExPASy Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13 Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = -1 Query: 140 LINGAVKGLIKPQRGLRQGCPLSPYLFITCAEAFSSLLQQAEQQRLIHGLSFGNDL-KISHLLFADDS 340 +INGA +GL+ P RGLRQG PLSPYLFI C E S L ++A++Q + G+ N+ +I+HLLFADD+ Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADDT 80 The following BLAST results are available for this feature:
BLAST of CX069994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069994 ID=CX069994; Name=CX069994; organism=Citrus sinensis; type=EST; length=790bpback to top |