CX069789
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069789 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16 Identity = 70/279 (25.09%), Postives = 120/279 (43.01%), Query Frame = -3 Query: 2 CFKCGQKVHWKNDCPKIVKS----------------CRGNLFVI------EVCL-VQNPIDTWVLD*GATNHICNSLYWFQDTRKISEESVKLQLGTGQFVSAVKTGSVLLSFNNNETLVLNNCLYVPDIKRNLISVTCLSKQGYTINFGSSV-SIFHNKRLICSGTLEDNLYHSSPMIHSIHDTVINNDEHTHLSKKRNISSNQCYL*HLRLGHINQNRIQRMIKDRLLGQLENESLPLCESCLEGKMTKRSFSAKRVRATVPFELVHTDVCGPINVQ 766 C+ C Q H+K DCP K + N V+ E C+ + P WV+D A++H F R ++ + +++G + G + + N TLVL + +VPD++ NLIS L + GY F + + +I G LY ++ I +N + + IS + L H R+GH+++ +Q + K L+ + ++ C+ CL GK + SF R +LV++DVCGP+ ++ Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLF--CRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNA---EICQGELN-------AAQDEISVD---LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIE 495
BLAST of CX069789 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3) HSP 1 Score: 83.5741 bits (205), Expect = 1.631e-15 Identity = 81/286 (28.32%), Postives = 133/286 (46.50%), Query Frame = -3 Query: 11 DGKPKGKCFKCGQKVHWKNDC--------------PKIVKSC--RGNLFVIEVCLVQNPIDT--WVLD*GATNHICNSLYWFQDTRKISEESVKLQLGTGQFVSAVKTGSVLLSFNNNETLVLNNCLYVPDIKRNLISVTCLSKQGYTINFG-SSVSIFHNKRLICSGTLEDNLYHSSPMIHSIHDTVINNDEHTHLSKKRNISSNQCYL*HLRLGHINQNRI-----QRMIKDR-LLGQLENESLPLCESCLEGKMTKRSFSAKRVRATV--PFELVHTDVCGPI 787 + K K KC CG++ H K DC K V++ G F+++ + +D +VLD GA++H+ N + D+ ++ G+F+ A K G V L N+ + L + L+ + NL+SV L + G +I F S V+I N ++ +S M++++ VIN ++ +K + N L H R GHI+ ++ + M D+ LL LE S +CE CL GK + F + + + P +VH+DVCGPI Sbjct: 225 NSKYKVKCHHCGREGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRL--RNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVK---------NSGMLNNV--PVINFQAYSINAKHK----NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE-LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPI 492 The following BLAST results are available for this feature:
BLAST of CX069789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069789 ID=CX069789; Name=CX069789; organism=Citrus sinensis; type=EST; length=873bpback to top |