FC922038

Overview
NameFC922038
Unique NameFC922038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2672 contig Csv1_Contig2672:429..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT1_ARATH (Adenine phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=APT1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.077e-21
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + GERA+I+DDL+ATGGTL+AAIRLLERVGV +VECACVIELPELKG+E+LGE  LFVLV
Sbjct:  180 EPGERAIIIDDLIATGGTLAAAIRLLERVGVKIVECACVIELPELKGKEKLGETSLFVLV 239          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT1_WHEAT (Adenine phosphoribosyltransferase 1 OS=Triticum aestivum GN=APT1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.330e-19
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            Q  +R LIVDDL+ATGGTL AA +L+ERVG  VVECACVIELPELKGR++LG+ P+FVLV
Sbjct:  116 QPNDRVLIVDDLIATGGTLCAAAKLIERVGAKVVECACVIELPELKGRDKLGDMPVFVLV 175          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT2_ARATH (Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.431e-16
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   10 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            ERALI+DDLVATGGTLSA+I LLER G  VVECACV+ LP+ KG+ +L  KPL+VLV
Sbjct:  126 ERALIIDDLVATGGTLSASINLLERAGAEVVECACVVGLPKFKGQCKLKGKPLYVLV 182          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_DESOH (Adenine phosphoribosyltransferase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=apt PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.637e-13
Identity = 33/58 (56.90%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    7 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            GER ++VDDL+ATGGT+ A I L+E++G  VVECA VI+LP+LKGRE++ +  +F L+
Sbjct:  111 GERVVVVDDLIATGGTVKATIDLVEKLGGEVVECAFVIDLPDLKGREKIRDYKMFALM 168          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_MASHI (Adenine phosphoribosyltransferase OS=Mastomys hildebrantii GN=APRT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + G+R +IVDDL+ATGGT+ AA  LL ++   VVEC  ++EL  LKGRERLG  P F L+
Sbjct:  118 EPGQRVVIVDDLLATGGTMCAACELLNQLRAEVVECVSLVELTSLKGRERLGPIPFFSLL 177          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_STOLO (Adenine phosphoribosyltransferase OS=Stochomys longicaudatus GN=APRT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + G+R +IVDDL+ATGGT+ AA  LL ++   VVEC  ++EL  LKGRERLG  P F L+
Sbjct:  118 EPGQRVVIVDDLLATGGTMCAACELLNQLRAEVVECVSLVELTSLKGRERLGPIPYFSLL 177          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_LACLA (Adenine phosphoribosyltransferase OS=Lactococcus lactis subsp. lactis GN=apt PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    7 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            G+R LIVDDL+ATGGT++A I L+E++G  VV CA +IEL ELKGRE++G+    VL+
Sbjct:  111 GQRVLIVDDLLATGGTIAATIELVEKMGGIVVGCAFLIELDELKGREKIGDYDYKVLM 168          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_RHOS5 (Adenine phosphoribosyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=apt PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 153
            QAGER L+VDDL+ATGGT  A IRL+E++G  VV CA V++LP+L GR++L
Sbjct:  112 QAGERILLVDDLLATGGTAEAGIRLIEQLGGEVVGCAFVVDLPDLGGRKKL 162          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_MUSSI (Adenine phosphoribosyltransferase OS=Mus spicilegus GN=Aprt PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + G+R +IVDDL+ATGGT+ AA  LL ++   VVEC  ++EL  LKGRERLG  P F L+
Sbjct:  118 EPGQRVVIVDDLLATGGTMFAACDLLHQLRAEVVECVSLVELTSLKGRERLGPIPFFSLL 177          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_MUSPA (Adenine phosphoribosyltransferase OS=Mus pahari GN=Aprt PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + G+R +IVDDL+ATGGT+ AA  LL ++   VVEC  ++EL  LKGRERLG  P F L+
Sbjct:  118 EPGQRVVIVDDLLATGGTMFAACDLLHQLRAEVVECVSLVELTSLKGRERLGPIPFFSLL 177          
The following BLAST results are available for this feature:
BLAST of FC922038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
APT1_ARATH2.077e-2180.00Adenine phosphoribosyltransferase 1 OS=Arabidopsis... [more]
APT1_WHEAT4.330e-1973.33Adenine phosphoribosyltransferase 1 OS=Triticum ae... [more]
APT2_ARATH3.431e-1671.93Adenine phosphoribosyltransferase 2 OS=Arabidopsis... [more]
APT_DESOH4.637e-1356.90Adenine phosphoribosyltransferase OS=Desulfococcus... [more]
APT_MASHI8.746e-1255.00Adenine phosphoribosyltransferase OS=Mastomys hild... [more]
APT_STOLO1.142e-1155.00Adenine phosphoribosyltransferase OS=Stochomys lon... [more]
APT_LACLA1.142e-1158.62Adenine phosphoribosyltransferase OS=Lactococcus l... [more]
APT_RHOS51.948e-1162.75Adenine phosphoribosyltransferase OS=Rhodobacter s... [more]
APT_MUSSI1.948e-1155.00Adenine phosphoribosyltransferase OS=Mus spicilegu... [more]
APT_MUSPA1.948e-1155.00Adenine phosphoribosyltransferase OS=Mus pahari GN... [more]

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Properties
Property NameValue
Genbank descriptionC06056H01T7 RindPdigS Citrus sinensis cDNA clone C06056H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922038 ID=FC922038; Name=FC922038; organism=Citrus sinensis; type=EST; length=343bp
CAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGG
GACCTTGTCTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGG
TTGAGTGTGCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAACGG
CTGGGAGAGAAACCACTATTTGTTCTTGTAAGCTAAACTTGATCTCAGTT
TATGGTTTAAATGCAATGTTTGTGGACCATATGGGTTTCTAGTCGCTCGG
GCTCTGCTCAAAGCTTGAGAACTTCATAAAACCATCTGATTAATATAAGA
GCAGTTTCATTGGCTTTTTAAAAAAAAAAAAAAAAAAAAAAAA
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