FC922036

Overview
NameFC922036
Unique NameFC922036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10271 contig Csv1_Contig10271:571..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922036 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.129e-51
Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 2
Query:    2 PLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEP 340
            P+G+LKANLIQFEP+LP+WK SAI+ +GVGNENKIALRFD  FWPNVE LG+VAPTSYACGYFLNLHKATGHPVLVYMAAG  A DLEKLSDE+ ANFVM+QLKKMFPDA +P
Sbjct:  278 PIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFWPNVEFLGMVAPTSYACGYFLNLHKATGHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMFPDAPDP 390          
BLAST of FC922036 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.300e-43
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 2
Query:    2 PLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPV 343
            PLG+LK+ +I FEPKLP+WK  AI D+GVG ENKI L FDNVFWPNVE LGVVA TSY C YFLNLHKAT HPVLVYM AG+ A D+EK SDE+AANF   QL+K+ PDA+ P+
Sbjct:  277 PLGVLKSGMITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFWPNVEFLGVVAETSYGCSYFLNLHKATSHPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPI 390          
BLAST of FC922036 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.634e-42
Identity = 79/114 (69.30%), Postives = 93/114 (81.58%), Query Frame = 2
Query:    2 PLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPV 343
            PLG+LK+  I+FEPKLPEWK  AI D+GVG ENKI L F+ VFWP VE LGVVA TSY C YFLNLHKATGHPVLVYM AG+ A D+EK+SDE+AANF ++QL+++ PDA  PV
Sbjct:  276 PLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPV 389          
BLAST of FC922036 vs. ExPASy Swiss-Prot
Match: KDM1_MOUSE (Lysine-specific histone demethylase 1 OS=Mus musculus GN=Kdm1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 2
Query:    2 PLGILKAN--LIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEP 340
            PLG+LK     +QF P LPEWK SA+  +G GN NK+ L FD VFW P+V L G V  T+ + G    F NL+KA   P+L+ + AG  A  +E +SD+      +  LK +F  +  P
Sbjct:  627 PLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVP 742          
BLAST of FC922036 vs. ExPASy Swiss-Prot
Match: KDM1_HUMAN (Lysine-specific histone demethylase 1 OS=Homo sapiens GN=KDM1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 2
Query:    2 PLGILKAN--LIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEP 340
            PLG+LK     +QF P LPEWK SA+  +G GN NK+ L FD VFW P+V L G V  T+ + G    F NL+KA   P+L+ + AG  A  +E +SD+      +  LK +F  +  P
Sbjct:  626 PLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVP 741          
BLAST of FC922036 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 2
Query:   17 KANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEP 340
            ++N ++F+P LP+WK  AI  +G GN NK+ L FD +FW PN  L G V  T+ + G        +  PVL+ + AG  A  +E ++D+      M  LK +F + + P
Sbjct:  634 QSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSISSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVP 742          
BLAST of FC922036 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 2
Query:    2 PLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF 322
            PLG+LK+  I FEP+LPE KL AI  +G G  NK+A+ F +VFW   ++  G +       G    F + H  +G  VL+ + AG  A + EK+    A + V+  LK ++
Sbjct:  405 PLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIY 515          
The following BLAST results are available for this feature:
BLAST of FC922036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PAO4_ARATH1.129e-5182.30Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
PAO3_ARATH4.300e-4370.18Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
PAO2_ARATH1.634e-4269.30Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
KDM1_MOUSE1.703e-1542.02Lysine-specific histone demethylase 1 OS=Mus muscu... [more]
KDM1_HUMAN1.703e-1542.02Lysine-specific histone demethylase 1 OS=Homo sapi... [more]
LSDA_DROME1.220e-1335.78Possible lysine-specific histone demethylase 1 OS=... [more]
LDL2_ORYSJ3.323e-1136.94Lysine-specific histone demethylase 1 homolog 2 OS... [more]
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Properties
Property NameValue
Genbank descriptionC06056G11T7 RindPdigS Citrus sinensis cDNA clone C06056G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922036 ID=FC922036; Name=FC922036; organism=Citrus sinensis; type=EST; length=345bp
ACCCCTCGGTATTCTTAAGGCCAATTTAATTCAGTTTGAACCGAAGTTGC
CCGAGTGGAAGCTTTCTGCAATAGCAGATATTGGTGTGGGCAATGAAAAT
AAGATTGCCCTCCGATTTGATAATGTTTTTTGGCCAAATGTGGAACTCCT
AGGCGTTGTTGCCCCCACGTCTTATGCTTGTGGTTATTTCCTTAATCTTC
ACAAGGCAACCGGGCATCCAGTCCTCGTGTATATGGCTGCTGGAAGATTT
GCTTATGATCTGGAGAAGCTATCAGATGAGTCTGCTGCAAATTTTGTGAT
GATGCAACTCAAGAAAATGTTTCCTGACGCAACTGAGCCGGTTCA
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