CX046460

Overview
NameCX046460
Unique NameCX046460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = -2
Query:  288 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 704
            LSSA+V TSFIR  P   SL+++P+   Q++FGLK+   RGGRV AMATYKVK ITP GE E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+QIGEGFVLTCAAYPTSDVTIETHKEE++
Sbjct:    6 LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.950e-52
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = -2
Query:  282 MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 713
            MA++S+ M+STSF+  KP  TSLK +PN+G+A+FGLK+  GG+V  MA+YKVKLITP G  E +CPD+ +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:    1 MASVSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 144          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.953e-51
Identity = 98/142 (69.01%), Postives = 121/142 (85.21%), Query Frame = -2
Query:  288 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 704
            LSSA+VSTSF+R + T  SL+++P    Q++FGLK++  RGGRV AMATYKVK ITP GE+E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+Q+ EG+VLTC AYPTSDV IETHKEE +
Sbjct:    6 LSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.856e-51
Identity = 95/142 (66.90%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  288 MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 713
            MA++S  M+STSF+  KP  TSLKA+ N+G+A+FGLK+ R GR+  MA+YKVKLITP G  E  CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G+VDQS+ +FLD+DQ   GFVLTC AYP  DVTIETHKEEEL
Sbjct:    1 MASISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.891e-48
Identity = 96/145 (66.21%), Postives = 116/145 (80.00%), Query Frame = -2
Query:  288 TMATLSSAMVSTSFIRSKPTATSLKAMP-NMGQAIFGLKANRG-GRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 716
            T A LS A +ST+F    P  T+  A+P N+G+A+FGLK++   GRV AMA YKV L+TP G++E+ CPDD +ILDAAEEAG+DLPYSCRAG+CSSC GKV SG+V+Q + SFLDDDQI EG+VLTC AYPT DVTIETHKEEEL
Sbjct:    4 TTAALSGATMSTAFAPKTPPMTA--ALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.321e-46
Identity = 92/142 (64.79%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  288 ATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITP-GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 710
            +TLS+  VS S +  +    +     NMGQA+FGLKA   GRV AMATYKV LIT   G    +CPDD ++LD AEE G+DLPYSCRAG+CSSC GKVV+G+VDQS+QSFLDDDQI  G+VLTCAAYP++DVTIETHKEEEL
Sbjct:    3 STLSTLSVSASLLPKQQPMVASSLPTNMGQALFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.017e-43
Identity = 88/145 (60.69%), Postives = 102/145 (70.34%), Query Frame = -2
Query:  288 TMATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 716
            T   L    VSTSF+R++P   S+           GLK +  RG   VAMA+YKVKL+TP G +E  CP D +ILD AEE G+DLPYSCRAG+CSSC GKVV G VDQS+ SFLDD+QI  GFVLTC AYPTSDV IETHKEE+L
Sbjct:    3 TTPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.593e-43
Identity = 88/144 (61.11%), Postives = 112/144 (77.78%), Query Frame = -2
Query:  288 ATLSSAM-VSTSFIRSKPTATSLKAMP-NMGQAIFGLKA-NRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 710
            AT ++ M ++T+F+        + A+P N G+++FGLK  +RGGR+  MA YKV L+TP G  E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQI EG+VLTCAAYP SDVTIETHKEEEL
Sbjct:    3 ATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.290e-42
Identity = 86/135 (63.70%), Postives = 103/135 (76.30%), Query Frame = -2
Query:  282 STSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 686
            S+S +R+ P  T++ A+P     I G  A+   R+ A ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG+VDQS+QS+LDD QI +G+VLTC AYPTSDV IETHKEEEL G
Sbjct:   16 SSSSLRAAPAPTAV-ALPAAKVGIMGRSASSRRRLRAQATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTG 149          
BLAST of CX046460 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.521e-42
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = -2
Query:  288 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 572
            ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG VDQS++SFLDDDQI EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CX046460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_ARATH3.727e-5473.24Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER_CAPAN5.950e-5265.97Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER1_ARATH2.953e-5169.01Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER1_SOLLC3.856e-5166.90Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER1_MESCR8.891e-4866.21Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_SILPR8.321e-4664.79Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER1_PEA1.017e-4360.69Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER1_SPIOL6.593e-4361.11Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER1_MAIZE7.290e-4263.70Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER_BRANA9.521e-4283.16Ferredoxin OS=Brassica napus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_8B06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8B06-C12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046460 ID=CX046460; Name=CX046460; organism=Citrus sinensis; type=EST; length=717bp
GAAAATACCGATGACATAAAACGAAAGATCTATTGTTCTTGCTTGACTCT
TAATTATAGAACGGTACCATGTTCGGATGGGATGAGAAACCTCACCCTCT
AGGTACGATGCGCATTCATGGCCGGTGCAATTACAACAACTTCTTTGCAA
CAAGAAATAAAAACACATTACAAGAATCATTCTCAAATTACTCAATATCC
CTTTCAAAGCATTAAAATAATCAGACAAAACACAACACATAAAAGAGAAG
ATAATAATGAGATATCAAGAGCACATTATTAACCAGCGAGCTCCTCTTCC
TTGTGAGTCTCTATAGTAACATCACTTGTTGGATAAGCAGCACAAGTGAG
AACAAAACCTTCTCCAATTTGATCATCATCCAGAAAGCTTTGCTCCGACT
GGTCAACGGTTCCAGACACAACTTTCCCAGTACAGGAAGAGCAAGCCCCA
GCCCTGCATGAGTACGGAAGATCAAGCCCAGCTTCTTCAGCAGCATCAAG
AATAAACGAGTCATCAGGACAGTTGATTTCTTCCTCTCCCCCAGGTGTAA
TGAGCTTGACTTTGTATGTAGCCATGGCTACAACACGGCCACCTCTGTTG
GCTTTGAGGCCAAATATAGCCTGACCCATGTTAGGCATGGCTTTGAGGCT
GGTCGCTGTAGGCTTGCTTCTGATGAATGAGGTGCTGACCATGGCGCTTG
AGAGGGTGGCCATTGTT
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