DN134942

Overview
NameDN134942
Unique NameDN134942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13418 contig Csv1_Contig13418:44..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RBM8A_RAT (RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.424e-36
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGPSTG 609
            KK KGRGF  E  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RBM8A_HUMAN (RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.424e-36
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGPSTG 609
            KK KGRGF  E  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RBM8A_BOVIN (RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.424e-36
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGPSTG 609
            KK KGRGF  E  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RBM8A_XENTR (RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.628e-36
Identity = 72/128 (56.25%), Postives = 97/128 (75.78%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGPSTG 609
            KK KGRGF   AD    +R+ + +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFG--ADEGTRARIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFVRGPPKG 157          
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RBM8A_MOUSE (RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 9.963e-36
Identity = 70/128 (54.69%), Postives = 93/128 (72.66%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGPSTG 609
            KK KGRGF  +  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSKEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RB8AB_XENLA (RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-B PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.963e-36
Identity = 72/128 (56.25%), Postives = 97/128 (75.78%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGPSTG 609
            KK KGRGF   AD    +R+ + +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFG--ADEGTRTRIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG 157          
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RBM8A_DANRE (RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.219e-35
Identity = 70/125 (56.00%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGP 600
            KK KGRGF  E  +    R    +++++  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+  +NG EL+ Q ++VDW F  GP
Sbjct:   33 KKRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGP 154          
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RB8AA_XENLA (RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-A PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.786e-35
Identity = 72/128 (56.25%), Postives = 96/128 (75.00%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGPSTG 609
            KK KGRGF   AD    +R+ +  ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFG--ADEGTKTRIREV-YDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG 157          
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RBM8A_SALSA (RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.439e-34
Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGP 600
            K+ KGRGF  E  +    R    +++++  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+  +NG +++ Q ++VDW F  GP
Sbjct:   33 KRRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQDMMGQPISVDWGFVRGP 154          
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: RBM8A_DROME (RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.346e-32
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  229 KKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGP 600
            K  KGRGF  ++++       +R       +  PGPQRS+EGWI+ VT +HEEAQED++Q  F +YGEI+N+HLNLDRRTGF KGYAL+EYE  ++A  A  A+NG E++ QT+ VDW F  GP
Sbjct:   31 KHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154          
The following BLAST results are available for this feature:
BLAST of DN134942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RBM8A_RAT3.424e-3655.47RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm... [more]
RBM8A_HUMAN3.424e-3655.47RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE... [more]
RBM8A_BOVIN3.424e-3655.47RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2... [more]
RBM8A_XENTR7.628e-3656.25RNA-binding protein 8A OS=Xenopus tropicalis GN=rb... [more]
RBM8A_MOUSE9.963e-3654.69RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE... [more]
RB8AB_XENLA9.963e-3656.25RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8... [more]
RBM8A_DANRE2.219e-3556.00RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=... [more]
RB8AA_XENLA3.786e-3556.25RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8... [more]
RBM8A_SALSA1.439e-3453.60RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=... [more]
RBM8A_DROME1.346e-3252.42RNA-binding protein 8A OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionwca03f09 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134942 ID=DN134942; Name=DN134942; organism=Citrus sinensis; type=EST; length=613bp
GGCCGGGGGTCTTCTCAGAATAAAAATTAAAACGCAAGACGCAGGCAAAT
CTCATATCCCTAAAAGTTCGAAAAAAACACAACAAAAATGGCGAACGCAG
AAGTGGACGCGCTCGACTTCGAGGACGACGACTTGATGGACGAGGACGGG
ACTGCCGACGTCGATGCATCCTCTTCCCCGCGGGCCCCGCAGCCCAAGCT
TAAGTCCGCCATCACTGGTGGCGCACCTAAGAAGACCAAAGGACGCGGTT
TTCGTGAAGAAGCCGACTCCGAGCGACATAGCCGGCTCGCTGATCGTAAT
TTTGAGTCTCTTGGCACCGATGGGGGACCGGGTCCCCAACGATCTATTGA
GGGATGGATAATTTTGGTTACTGGTGTGCATGAAGAGGCACAAGAAGATG
ATTTACAAAATGTATTTGGTGAATATGGGGAGATCAGAAACTTGCATTTG
AATCTTGATCGTCGTACAGGTTTTGTGAAGGGGTATGCGCTGATTGAATA
TGAGAATTTTGAGGAAGCGCAGAATGCCATAACTGCAATGAATGGAGGTG
AACTTCTTACACAGACCCTGACTGTTGATTGGGCCTTCAGCAANGGGCCT
AGTACTGGACCCT
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