DN134937

Overview
NameDN134937
Unique NameDN134937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.829e-63
Identity = 118/143 (82.52%), Postives = 123/143 (86.01%), Query Frame = 1
Query:  163 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKYLLV 591
            MVSGSGIC+KRVVVDARHHMLGRLASI AKELLNGQKVV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            YEGVP PY  +KRMVIPDAL VLRLQ GHKY L+
Sbjct:    1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLL 143          
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.186e-62
Identity = 114/143 (79.72%), Postives = 123/143 (86.01%), Query Frame = 1
Query:  163 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKYLLV 591
            MVSGSGICAKRVVVDARHHMLGRLAS+VAK+LLNGQ +V VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PY  +KRMV+PDAL VLRLQ GHKY L+
Sbjct:    1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLL 143          
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.641e-62
Identity = 116/143 (81.12%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  163 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKYLLV 591
            MVSGSGIC+KRVVVDARHHM GRLASI+AKELLNGQ VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PY  VKRMVIPDAL VLRLQ GHKY L+
Sbjct:    1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLL 143          
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.712e-61
Identity = 114/143 (79.72%), Postives = 121/143 (84.62%), Query Frame = 1
Query:  163 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKYLLV 591
            MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EG+P PY  +KRMVIPDAL VLRLQ GHKY L+
Sbjct:    1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLL 143          
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.229e-60
Identity = 112/143 (78.32%), Postives = 121/143 (84.62%), Query Frame = 1
Query:  163 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKYLLV 591
            MVSGSGICAK VVVDARHHMLGRLASI+AKELL+GQ+VV VRCEEICMSGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++I WRT+RGMIPHKT            +EGVP PY   KRMVIPDAL VLRLQ GHKY L+
Sbjct:    1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLL 143          
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.700e-57
Identity = 111/143 (77.62%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  163 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKYLLV 591
            MVSGSGI AKRVVVDARHHMLGRLASIVAKELLNGQKVV VR EEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH  AP+KIFWRTVRGMIPHKT            YEG+P P+   KR+V+PDAL VLRLQ GHKY L+
Sbjct:    1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLL 142          
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.176e-40
Identity = 81/134 (60.45%), Postives = 98/134 (73.13%), Query Frame = 1
Query:  190 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKYLLV 591
            K VVVD R H+LGRLA+ +AKELLNGQ+VVAVR EEI +SG L R K+K+  FL+KRMNT P  GP HFR+PA+I WRT+RGMIPHKT            +EGVP PY  +KRMVIP AL VLRL+ G K+ ++
Sbjct:    4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVL 137          
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.011e-37
Identity = 74/129 (57.36%), Postives = 94/129 (72.87%), Query Frame = 1
Query:  196 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKY 582
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PY   KRMV+P AL V+RL+   K+
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKF 135          
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.011e-37
Identity = 74/129 (57.36%), Postives = 94/129 (72.87%), Query Frame = 1
Query:  196 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKY 582
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PY   KRMV+P AL V+RL+   K+
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKF 135          
BLAST of DN134937 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.011e-37
Identity = 74/129 (57.36%), Postives = 94/129 (72.87%), Query Frame = 1
Query:  196 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYXXVKRMVIPDALXVLRLQXGHKY 582
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PY   KRMV+P AL V+RL+   K+
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKF 135          
The following BLAST results are available for this feature:
BLAST of DN134937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
R13A4_ARATH1.829e-6382.5260S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH1.186e-6279.7260S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A2_ARATH2.641e-6281.1260S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
R13A3_ARATH1.712e-6179.7260S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
RL13A_PICMA3.229e-6078.3260S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_LUPLU5.700e-5777.6260S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_CYAPA2.176e-4060.4560S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_PONAB1.011e-3757.3660S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_MACFA1.011e-3757.3660S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN1.011e-3757.3660S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionwca03f02 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134937 ID=DN134937; Name=DN134937; organism=Citrus sinensis; type=EST; length=594bp
AGAGAGAGAGAGAGCGTTCATGCAACCCTAGAAACCCTAGCTCCACATTN
NNGCCTCACATATATATTTGACAACACTCGGAAACCTCCAGTTCGAGAGA
GGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAGAGAGA
GGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGAGTGGT
GGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGTGGCCA
AGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAGAGATT
TGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGGTTCCT
TCGCAAGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTTCCGCG
CCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGCATAAG
ACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAAGGGGT
CCCTGCACCTTATGANNNGGTGAAGAGAATGGTTATCCCCGACGCTCTCA
ANGTTTTGAGGCTTCAGNNNGGTCACAAGTACCTGCTTGTTAGN
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