DN134935

Overview
NameDN134935
Unique NameDN134935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134935 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.617e-30
Identity = 74/180 (41.11%), Postives = 110/180 (61.11%), Query Frame = 1
Query:   82 KYFLILLAIFSYLNSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPRGVDAMQDCLEELSDSVDELRKSIGEMGLI---KASNFELTMSDIQTWVSAALTDETTCSDGFEXNTVNGKV---VRAQIVKIAHM 603
            K  L+  A+   L ++SA        A   +FIKTSC+ TTYP +C +SL+ +A  IQ +P+ LA  +L V+L   +     M +++K  G+K R   A+ DCLEE+ DS+D + +S  EM  +   K ++F   MS+++TWVSAALTDETTC DGF    ++GK+   VRAQ+V +A +
Sbjct:    5 KSTLVFSALLVILAAASA--------APANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARV 176          
BLAST of DN134935 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.202e-17
Identity = 57/180 (31.67%), Postives = 100/180 (55.56%), Query Frame = 1
Query:   91 LILLAIFSYLNSSSASRHGPSKI----AADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL-AMAKSTSAVMLKMSKSPGMKPRGVDAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMSDIQTWVSAALTDETTCSDGFEXNTVNGKVVRAQI---VKIAHM 603
            L+LLA    + +++ +++   KI    +     +K+ CSST YP LC+ ++A       TS K +  ASLN+T  A+  +  AV   ++K  G+ PR V A+ DCLE + +++DEL  ++ ++    K  +      D++T +S+A+T++ TC DGF  +  + KV +A +   V + HM
Sbjct:   29 LLLLASIVGIAATTTNQNKNQKITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHM 208          
BLAST of DN134935 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 44/147 (29.93%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  178 IKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKM-SKSPGMKPRGVDAMQDCLEELSDSVDELRKSIGEMGLIKA-SNFELTMSDIQTWVSAALTDETTCSDGFEXNTVNGKVVRAQI---VKIAHM 603
            +++SCSST YP LC  ++     +  TS K +  AS+N+T+   +     + K+  K  G+ PR   A+ DCLE + +++DEL +++ ++ L            D++T +S+A+T++ TC DGF  +  + +V +A +   + + HM
Sbjct:   59 LRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHM 205          
BLAST of DN134935 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 56/194 (28.87%), Postives = 92/194 (47.42%), Query Frame = 1
Query:   31 SKVRERDMEGSSSNHMLKYFLILLAIFSYL-----------NSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPRGVDAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMSDIQTWVSAALTDETTCSDGFEXNTVNGKV 570
            +K+ E     + SN   K   + LA+F+ L             +S    G +        +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  R   A+ DCLE + +++DEL K++ ++       +      D++T +SAA+T++ TC DGF  +  N  V
Sbjct:    9 TKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHV 202          
BLAST of DN134935 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 56/194 (28.87%), Postives = 92/194 (47.42%), Query Frame = 1
Query:   31 SKVRERDMEGSSSNHMLKYFLILLAIFSYL-----------NSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPRGVDAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMSDIQTWVSAALTDETTCSDGFEXNTVNGKV 570
            +K+ E     + SN   K   + LA+F+ L             +S    G +        +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  R   A+ DCLE + +++DEL K++ ++       +      D++T +SAA+T++ TC DGF  +  N  V
Sbjct:    9 TKLSESSSNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHV 202          
BLAST of DN134935 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.726e-14
Identity = 48/169 (28.40%), Postives = 80/169 (47.34%), Query Frame = 1
Query:   91 LILLAIFSYLNSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL---AMAKSTSAVMLKMSKSPGMKPRGVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEXNTVNGKVVRAQIV 588
            ++   IF+ + +  + +  P       + I  +CS + YP LC  +L      +      L H S N TL   + A  TS+ +        M PR   A   CLE L DSVD L +++  + ++       + SD+ TW+S+A+T+  TC+DGF+     G  V+ Q++
Sbjct:   46 VVCFGIFAGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQ----MPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE---SHSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVI 207          
BLAST of DN134935 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 42/135 (31.11%), Postives = 80/135 (59.26%), Query Frame = 1
Query:  178 IKTSCSSTTYPTLCYKSLARHASLIQ--TSPKLLAHASLNVTL-AMAKSTSAVMLKMSKSPGMKPRGVDAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMSDIQTWVSAALTDETTCSDGFEXNTVNGKV 570
            +K++CS+T +P LCY ++   +   +  TS K +   SLN+T+ A+ ++  AV   +    G+ PR   A+ DCLE + +++DEL  ++ ++ L     + +  + D++T +S+A+T++ TC DGF  +  + KV
Sbjct:   66 VKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKV 200          
The following BLAST results are available for this feature:
BLAST of DN134935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
21KD_DAUCA1.617e-3041.1121 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME2_ARATH1.202e-1731.67Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH4.275e-1529.93Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI2.122e-1428.87Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI2.122e-1428.87Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME61_ARATH4.726e-1428.40Probable pectinesterase/pectinesterase inhibitor 6... [more]
PMEU1_SOLLC8.062e-1431.11Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
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Properties
Property NameValue
Genbank descriptionwca03e11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03e11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134935 ID=DN134935; Name=DN134935; organism=Citrus sinensis; type=EST; length=605bp
ACTCAATCCTCACTTCATTTGCTCATAATTTCAAAGGTCAGAGAGAGAGA
CATGGAAGGTTCATCCTCAAATCATATGCTTAAATACTTTCTCATTTTAC
TAGCCATTTTTTCCTACTTAAATTCAAGCTCAGCCTCTAGACATGGCCCC
TCTAAAATTGCTGCTGACAGAAGGTTCATCAAAACATCTTGCAGTTCAAC
AACTTATCCAACACTTTGCTATAAATCCCTTGCTAGACATGCAAGCTTAA
TCCAAACAAGCCCTAAGCTCCTCGCCCATGCATCCCTCAACGTGACCCTT
GCAATGGCTAAATCAACGTCAGCCGTCATGTTAAAGATGTCGAAAAGCCC
TGGAATGAAGCCTAGAGGGGTGGATGCCATGCAAGATTGTTTGGAGGAGC
TGAGTGATTCAGTTGATGAGCTCAGAAAGTCCATTGGCGAAATGGGTCTG
ATCAAAGCTTCAAATTTTGAACTTACAATGAGTGATATACAGACTTGGGT
TAGTGCTGCTTTGACTGATGAGACTACTTGCAGCGATGGATTTGAGANNA
ATACGGTGAATGGGAAAGTTGTGAGGGCCCAGATTGTGAAGATTGCTCAT
ATGAC
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