DN134923

Overview
NameDN134923
Unique NameDN134923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134923_ssr157 microsatellite DN134923_ssr157:157..166. BLAST: Citrus ESTs to Prunus persica proteins V1
DN134923_ssr103 microsatellite DN134923_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1796 contig Csv1_Contig1796:1..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APXS_ARATH (L-ascorbate peroxidase S, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=APXS PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 5.209e-62
Identity = 113/143 (79.02%), Postives = 129/143 (90.21%), Query Frame = 3
Query:  216 RRSSVNRGY-STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCP 641
            R +SVNR + ST   TK ++SDPDQLK+AREDI+ELL + FCHPILVRLGWHDAGTY+KNI+EWP+RGGAN SLRF++ELKHAANAGLVNAL LI+ IK+KYSG++YADLFQLASATAIEEAGGPKIPMKYGRVD SGPE CP
Sbjct:   82 RIASVNRSFNSTTAATKSSSSDPDQLKNAREDIKELLSTKFCHPILVRLGWHDAGTYNKNIKEWPQRGGANGSLRFDIELKHAANAGLVNALNLIKDIKEKYSGISYADLFQLASATAIEEAGGPKIPMKYGRVDASGPEDCP 224          
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APX8_ORYSJ (Probable L-ascorbate peroxidase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=APX8 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.568e-58
Identity = 105/125 (84.00%), Postives = 116/125 (92.80%), Query Frame = 3
Query:  267 AASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCP 641
            AASD  QLKSAREDIRE+LK+T+CHPI+VRLGWHD+GTYDKNIEEWP+RGGA+ SLRF+ EL H ANAGL+NALKLIQPIKDKY G+TYADLFQLASATAIEEAGGPKIPMKYGRVDV+  EQCP
Sbjct:   84 AASDAAQLKSAREDIREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDAELSHGANAGLINALKLIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCP 208          
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APXT_ARATH (L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.494e-58
Identity = 107/145 (73.79%), Postives = 123/145 (84.83%), Query Frame = 3
Query:  207 ISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCP 641
            + Q++  +N   + + + KCAASD  QL SA+EDI+ LL++ FCHPILVRLGWHDAGTY+KNIEEWP RGGAN SLRFE ELKHAANAGL+NALKLIQP+KDKY  ++YADLFQLASATAIEEAGGP IPMKYGRVDV  PEQCP
Sbjct:   59 VLQKKHPINGTSTRMISPKCAASDAAQLISAKEDIKVLLRTKFCHPILVRLGWHDAGTYNKNIEEWPLRGGANGSLRFEAELKHAANAGLLNALKLIQPLKDKYPNISYADLFQLASATAIEEAGGPDIPMKYGRVDVVAPEQCP 203          
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APX7_ORYSJ (Probable L-ascorbate peroxidase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=APX7 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.734e-57
Identity = 104/133 (78.20%), Postives = 117/133 (87.97%), Query Frame = 3
Query:  243 STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCP 641
            S    +   AS   +LK+AREDIRELLK+T CHPILVRLGWHD+GTYDKNI+EWP+RGGAN SLRF+VELKH ANAGLVNALKL+QPIKDKY  ++YADLFQLASATAIEEAGGPKIPM YGR+DV+GPEQCP
Sbjct:   77 SASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCP 209          
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APX6_ORYSJ (Probable L-ascorbate peroxidase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=APX6 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.468e-56
Identity = 106/133 (79.70%), Postives = 118/133 (88.72%), Query Frame = 3
Query:  252 PTTKCAASDPD---QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCP 641
            P +  AA+  D   +L+ ARED+++LLKST CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRFE+ELKHAANAGLVNALKLIQPIKDK++GVTYADLFQLASATAIEEAGGPKIPM YGRVDV+ PEQCP
Sbjct:   28 PASSSAAAAGDAAAELRGAREDVKQLLKSTSCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFEIELKHAANAGLVNALKLIQPIKDKHAGVTYADLFQLASATAIEEAGGPKIPMIYGRVDVAAPEQCP 160          
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APX5_ORYSJ (Probable L-ascorbate peroxidase 5, chloroplastic OS=Oryza sativa subsp. japonica GN=APX5 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.605e-49
Identity = 96/137 (70.07%), Postives = 111/137 (81.02%), Query Frame = 3
Query:  234 RGYSTVPTTKCAASDPD-QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCP 641
            R  S+  +   AA D + +L++ARED+R+LLKS  CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRF VEL HAAN GL+ AL L+ PIK KY+GVTYAD+FQLASATAIEEAGGPKIPM YGR DV+  E+CP
Sbjct:   35 RPASSSSSAAAAAGDVEAELRAAREDVRQLLKSNPCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFGVELVHAANKGLLKALFLVIPIKSKYAGVTYADIFQLASATAIEEAGGPKIPMIYGRADVADGEECP 171          
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  285 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVS-GPEQ 635
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K K+  +TYADL+QLA   A+E  GGP I    GR D S  PE+
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEE 127          
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.935e-24
Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  285 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVS-GPEQ 635
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K ++  +TYADL+QLA   A+E  GGP I    GR D S  PE+
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEE 127          
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.604e-24
Identity = 56/113 (49.56%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  285 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVS 623
            Q+  AR  +R L+ S  C PI++RL WHDAGTYD N     + GGAN S+R+E E  H +NAGL  A+ L++PIK K   +TYADL+QLA   A+E  GGP +    GR D S
Sbjct:   13 QVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNT----KTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSS 121          
BLAST of DN134923 vs. ExPASy Swiss-Prot
Match: APX5_ARATH (L-ascorbate peroxidase 5, peroxisomal OS=Arabidopsis thaliana GN=APX5 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  285 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPE 632
            +++  R D+R L+ S  C PI++RL WHDAGTYD       + GGAN S+RF+ EL    N GL  A+   + +K K+  V+YADL+QLA   A+E  GGP IP   GR D    +
Sbjct:   12 EIEKTRRDLRALISSRNCAPIMLRLAWHDAGTYDAK----KKTGGANGSIRFKEELNRPHNKGLEKAVAFCEEVKAKHPRVSYADLYQLAGVVAVEVTGGPAIPFTPGRKDADSAD 123          
The following BLAST results are available for this feature:
BLAST of DN134923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
APXS_ARATH5.209e-6279.02L-ascorbate peroxidase S, chloroplastic/mitochondr... [more]
APX8_ORYSJ1.568e-5884.00Probable L-ascorbate peroxidase 8, chloroplastic O... [more]
APXT_ARATH3.494e-5873.79L-ascorbate peroxidase T, chloroplastic OS=Arabido... [more]
APX7_ORYSJ1.734e-5778.20Probable L-ascorbate peroxidase 7, chloroplastic O... [more]
APX6_ORYSJ1.468e-5679.70Probable L-ascorbate peroxidase 6, chloroplastic O... [more]
APX5_ORYSJ6.605e-4970.07Probable L-ascorbate peroxidase 5, chloroplastic O... [more]
APX3_ORYSJ8.686e-2549.15Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI1.935e-2448.31Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ9.604e-2449.56Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX5_ARATH5.270e-2243.97L-ascorbate peroxidase 5, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionwca03d03 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03d03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134923 ID=DN134923; Name=DN134923; organism=Citrus sinensis; type=EST; length=642bp
TACGGCCGGGGNNNCAACAGATACGACTGCAATCAAAATCACAATCACCG
ATGGCTTCCTCTTTGAGCACCGCCGCTTCTTCTCGCCTTCTTTGCTCCAC
CACCGCCGCCGCCGCAGCTGCTAAGCTTTCTTTCTCTTCCGCTTCTTCAC
TCTCTTTCTCTCTCTCCTCTTCTTCCTCCCTCAAATGCCTCAAATTCTCT
CCTCTCATCAGCCAGAGGAGATCGTCTGTGAACAGAGGATATAGCACCGT
ACCTACGACGAAATGTGCGGCGTCGGATCCTGATCAGTTGAAGAGTGCTA
GAGAAGATATTAGGGAGCTTCTCAAGTCTACATTTTGCCATCCTATTTTG
GTTCGTCTAGGATGGCATGATGCTGGTACTTATGACAAGAACATTGAGGA
GTGGCCTCGAAGGGGAGGAGCTAATGCAAGTCTTAGATTTGAGGTTGAGC
TAAAACACGCAGCCAATGCTGGGCTTGTGAATGCATTGAAACTGATTCAA
CCTATCAAGGACAAATATTCCGGTGTCACATATGCAGACTTATTCCAGTT
GGCTAGCGCTACTGCTATAGAGGAAGCCGGGGGTCCTAAGATCCCAATGA
AGTATGGAAGAGTGGATGTCTCAGGACCTGAGCAGTGCCCTG
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