CX044131

Overview
NameCX044131
Unique NameCX044131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length504
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:719..1222. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX044131 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.998e-16
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = -1 
Query:  370 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 504
            RDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQ
Sbjct:  219 RDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQ 263
[Close]
BLAST of CX044131 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.096e-14
Identity = 37/45 (82.22%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:  370 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 504
            RDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  214 RDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258
[Close]
BLAST of CX044131 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.096e-14
Identity = 37/45 (82.22%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:  370 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 504
            RDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:  214 RDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258
[Close]
BLAST of CX044131 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.096e-14
Identity = 36/45 (80.00%), Postives = 44/45 (97.78%), Query Frame = -1 
Query:  370 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 504
            RDA+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQ
Sbjct:  175 RDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQ 219
[Close]
BLAST of CX044131 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.443e-14
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = -1 
Query:  370 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 504
            RDALK+Y+KL+KEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQ
Sbjct:  223 RDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQ 267
The following BLAST results are available for this feature:
BLAST of CX044131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RRFC_SPIOL1.998e-1688.89Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
RRFC_ORYSJ1.096e-1482.22Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_ORYSI1.096e-1482.22Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_DAUCA1.096e-1480.00Ribosome-recycling factor, chloroplastic (Fragment... [more]
RRFC_ARATH2.443e-1482.22Ribosome-recycling factor, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_15F02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15F02-K3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044131 ID=CX044131; Name=CX044131; organism=Citrus sinensis; type=EST; length=504bp
TTTTTTTTTTTTTTTTTGTTAACAACGAATATCAGCCAGCATTTCCCGCC
ATTAAGCAGTAACATCACAGTGCTTTAGCATGACATTACAATTTATAATG
GTCCTACTCGTACCGTGGTCACTCTTCAGTGTTCCCAGTAAATAAGGTCA
CAGGTTGCTATACAAACAATTTTTACAAAGAGTCTAGAATAACTAATTTC
CACATTTCATTTCATAACAAAATATCCACCCGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CCCT
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