DN134829

Overview
NameDN134829
Unique NameDN134829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7125 contig Csv1_Contig7125:35..775. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of DN134829 vs. ExPASy Swiss-Prot
Match: KRP1_ARATH (Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis thaliana GN=KRP1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 56/180 (31.11%), Postives = 83/180 (46.11%), Query Frame = 3 
Query:  174 ASYIQLRNRTID--TGEKTSTENRCSSPGLELSDHDRVXXXXXXXXXXXERIEFVDLKDESGDVEAETSTYYGCRERRXXXXXXXXXXXXXXXXXXXXXT-----AKPSSEANSRRRSTVEN---------------MPAKSEIEDFFAEAEKKLVKQFSQKYNFDFVKEEPMEGRYKWV 647
            ++Y+QLR+R I     EK+S+ +     G+  S                ++ E + L++E  D + ETSTY    +R+                     +      K S +     R T+E                MP +SEIEDFF EAEK+L ++F +KYNFDF KE+P+EGRY+WV
Sbjct:   18 STYMQLRSRRIVYVRSEKSSSVSVVGDNGVSSS---------CSGSNEYKKKELIHLEEEDKDGDTETSTYRRGTKRKLFENLREEEKEELSKSMENYSSEFESAVKESLDCCCSGRKTMEETVTAEEEEKAKLMTEMPTESEIEDFFVEAEKQLKEKFKKKYNFDFEKEKPLEGRYEWV 188
[Close]
BLAST of DN134829 vs. ExPASy Swiss-Prot
Match: KRP6_ARATH (Cyclin-dependent kinase inhibitor 6 OS=Arabidopsis thaliana GN=KRP6 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 41/107 (38.32%), Postives = 53/107 (49.53%), Query Frame = 3 
Query:  330 VDLKDESGDVEAETSTYYGCRERRXXXXXXXXXXXXXXXXXXXXXTAKPSSEANSRRRSTVENMPAKSEIEDFFAEAEKK--LVKQFSQKYNFDFVKEEPMEGRYKW 644
            VDL+D   + E ETST+     R+                     T   SS A  R++  V   P  +EIED F+E E +    KQF +KYNFD V +EP+EGRYKW
Sbjct:   95 VDLEDHQIETETETSTFITSNFRKETSPVSEGLGETT--------TEMESSSATKRKQPGVRKTPTAAEIEDLFSELESQDDKKKQFIEKYNFDIVNDEPLEGRYKW 193
The following BLAST results are available for this feature:
BLAST of DN134829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KRP1_ARATH4.437e-1331.11Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis... [more]
KRP6_ARATH2.435e-1138.32Cyclin-dependent kinase inhibitor 6 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionwca01h05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01h05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134829 ID=DN134829; Name=DN134829; organism=Citrus sinensis; type=EST; length=741bp
TACGGCCGGGGGAGAAGTTGAGGGCTCAAGGGCTTACAGAAATTCCAGTG
ATGGAGGTCGCTCGAGTTGGCGTAAGAACGCGAACGCGAGCACGAGCTGA
AGCCCTGGCGGCTGCAACTTCTTCCAAGTTAGCTAAGAGAAGGAAACTAG
AGTGTGATGAAGTCAAAAGCTTTGCGTCTTATATTCAGCTCAGGAATCGT
ACAATTGATACTGGTGAGAAAACGTCGACGGAGAATCGGTGTTCAAGTCC
TGGCTTAGAATTATCTGATCATGATCGTGTTTCGACTTCATGTTGCTCCA
GTCACGGATCCAGTGAGAGAATAGAATTTGTAGATCTGAAGGATGAGAGT
GGTGATGTGGAAGCTGAAACATCGACGTATTATGGATGCAGAGAAAGGAG
AGACGCGACGCTGTCCAGCGAGCTTGAAGCTGAAGCTGGAGAAGAATCAG
ACAGCCTGGATTCAACTGCGAAGCCATCATCAGAGGCAAACTCTCGCCGT
AGATCAACGGTGGAGAACATGCCTGCCAAGTCTGAAATTGAGGACTTCTT
CGCTGAAGCTGAGAAAAAGCTCGTAAAACAATTTTCTCAGAAGTATAACT
TCGACTTCGTGAAAGAGGAGCCAATGGAAGGACGTTACAAGTGGGTAGGG
CNNAGGCCATGAAGAAGATTACCAATGAAGAAATTAAATTAAAAACAATG
GCGATATCTTCTGCNNNTATACGTATTGTACTTCTAGGTAT
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