CX043893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_PARUW (Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 3.300e-33 Identity = 79/224 (35.27%), Postives = 129/224 (57.59%), Query Frame = 1 Query: 118 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 LN G FP+K L Q+++++ I ++ A+ VQ G++VLEIGPG GSLT +L A V+A+EKD + ++ QL++ ED + + + S R AKV+AN+P++++T ++ +++ +FS + +++QEE A R+ S+Y IF+NFYS+P Y F V R F+P PKVD+A+V +LK+ P + FF + +AF Sbjct: 13 LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVVAVEKDFVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIANLPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALP-GQSDYSSFTIFLNFYSKPRYGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAF 228
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MOOTA (Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.452e-28 Identity = 76/229 (33.19%), Postives = 123/229 (53.71%), Query Frame = 1 Query: 106 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 T+ + KG PRKS GQ++++++ I ++A AA V GD V+EIGPG G+LT L V+AIE D+ + + E A D ++++ D +K + + + KVVAN+P+ I+T ++ LL +E+VL++Q E R L P +Y +++ V +Y+EP KVPRT F+P+P+VD+ V+ + V FF +V +AF Sbjct: 10 TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARAGLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVANLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYTEPAVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAF 235
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BACLD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28 Identity = 78/229 (34.06%), Postives = 128/229 (55.90%), Query Frame = 1 Query: 106 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 T + LN G +KSLGQ++++++ I D++ A V E V+EIGPG G+LT L V A E DQ ++ ++ + + D + V+ +D +K +R+ M F+ VVAN+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F PQP VD+AV+ L++ AV FF +V ++F Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVANLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEAKTVMNVPKTVFVPQPNVDSAVIRLTLRKEPAV-AVQDAAFFFQVVKASF 232
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_ALKOO (Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus oremlandii (strain OhILAs) GN=rsmA PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28 Identity = 70/217 (32.26%), Postives = 122/217 (56.22%), Query Frame = 1 Query: 145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAF 789 KSLGQ+++++ I D + A V EGD ++E+GPG GSLT + +VLA+E D+ ++ +++E + ++V+ ED +K + + F R KV+AN+P+ ++T +I + L + +++Q+E A R+ + T +Y ++I V +YS P+ KVP + F PQPKV++ V+ + D P V+ + FFS+V AF Sbjct: 23 KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLIPILKETLGAYPNVEVINEDVLKLDLHKLIEEKFPGRN-----VKVIANLPYYVTTPIIMKFLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYSNPKILLKVPPSVFIPQPKVESTVIRLDI---LDTPKVSVEREDLFFSLVKDAF 230
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRR6 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.534e-27 Identity = 74/231 (32.03%), Postives = 122/231 (52.81%), Query Frame = 1 Query: 94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA 786 DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +V ++ + D + V+ ED +K + H+ + K+ + KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ K+ + + ++FF VS A Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPIKVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAIL--KMVRRPEPAVAVEDENFFFKVSKA 228
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRP2 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.534e-27 Identity = 74/231 (32.03%), Postives = 122/231 (52.81%), Query Frame = 1 Query: 94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA 786 DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +V ++ + D + V+ ED +K + H+ + K+ + KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ K+ + + ++FF VS A Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPIKVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAIL--KMVRRPEPAVAVEDENFFFKVSKA 228
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SYMTH (Ribosomal RNA small subunit methyltransferase A OS=Symbiobacterium thermophilum GN=rsmA PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 6.028e-27 Identity = 74/229 (32.31%), Postives = 133/229 (58.08%), Query Frame = 1 Query: 109 IKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +KAL ++ G P+ LGQ+++++ + D + +AA ++ D+VLEIGPG G+LT L V+ +E D+ +V ++ + + D ++V+ D + + L R + AKVVAN+P+ I+T ++ +LL S VV+++Q+E A R+V P + Y +++ V +Y+EP +V R +F PQP+VD+AVV+ + ++ P ++FF +V +AF Sbjct: 9 LKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAAKAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLH----KLLGERLAPGQKAKVVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYTEPRIVLRVSRASFMPQPEVDSAVVSLRYRERP--PVDAPPEAFFRVVRAAF 230
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_HALOH (Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.873e-27 Identity = 74/215 (34.42%), Postives = 121/215 (56.28%), Query Frame = 1 Query: 145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 K LGQ+++++ I D++ A + DIV+EIGPG GSLT ++ V A EKD+ +V ++RE F + L+V+ +D ++ + F+ R S KV+AN+P+ I+T VI LL FS +VL++Q+E A R+ + + +Y +++ V +Y E E KVP T F P+P+V ++++ K Y V + FF MV + F Sbjct: 24 KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLVKVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMGLLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYYGEVEIFHKVPPTVFIPRPRVYSSIIKIKPHSEPVY-RVKNEGFFFKMVRAIF 232
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_CLOD6 (Ribosomal RNA small subunit methyltransferase A OS=Clostridium difficile (strain 630) GN=rsmA PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.873e-27 Identity = 69/231 (29.87%), Postives = 129/231 (55.84%), Query Frame = 1 Query: 100 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT + V+AIE D++++ ++++ + +D +V+ +D +K I+ + K + G K+VAN+P+ I+T ++ + L +++V+++Q+E A R+ T +Y ++I V +Y + E K PR F PQP VD+ V+ ++ Y V + FF V ++F Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMGKIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQE-----LVKDKLNGGPVKLVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRM-NAIPGTKDYGALSIAVQYYCDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEDIFFKTVKASF 230
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRZP (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain P1031) GN=rsmA PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.028e-26 Identity = 73/232 (31.47%), Postives = 121/232 (52.16%), Query Frame = 1 Query: 94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +V ++ + D + V+ ED +K + H+ + K+ KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPIKVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPVPAVAVEDENFFFKVSKASF 230 The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bpback to top |