CX043825

Overview
NameCX043825
Unique NameCX043825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9549 contig Csv1_Contig9549:490..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043825 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.011e-61
Identity = 118/184 (64.13%), Postives = 141/184 (76.63%), Query Frame = -1
Query:  248 QMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 799
            +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKVS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKT            F+ QHYVLYP KK   S +  ++   EPL+ SS
Sbjct:   84 EMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESN-EPLIDSS 266          
BLAST of CX043825 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.411e-31
Identity = 66/164 (40.24%), Postives = 101/164 (61.59%), Query Frame = -1
Query:  305 IPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKA 793
            IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N+LLDF GG  +  QM +   D  +W  F G+  K             FI QHY+LY   K+
Sbjct:   79 IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPKS 242          
BLAST of CX043825 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.247e-27
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = -1
Query:  320 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLY 790
            PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  ++  + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K             F  QH+ LY
Sbjct:  200 PVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357          
BLAST of CX043825 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.247e-27
Identity = 64/161 (39.75%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  311 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAK 790
            PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ + + WL   +   +A    + WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K             F  QH+ LY  K
Sbjct:  200 PVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360          
BLAST of CX043825 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 68/161 (42.24%), Postives = 92/161 (57.14%), Query Frame = -1
Query:  311 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAK 790
            PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG +LLDF GG  +  QM +QS + + W   +G+  K             F  QH+ LY  K
Sbjct:  200 PVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360          
BLAST of CX043825 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 71/187 (37.97%), Postives = 104/187 (55.61%), Query Frame = -1
Query:  239 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHP 790
            PV  NDV FS+HA+  T IT+ Q   Y+R  Q+VS I+  I+++   A  V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG  +  QMI+ + + + WV+ +G+  K             F+ QHYV Y   +   SS L+    V+     S  P
Sbjct:  205 PVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPP 389          
BLAST of CX043825 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.427e-23
Identity = 65/160 (40.62%), Postives = 88/160 (55.00%), Query Frame = -1
Query:  317 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVA--LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYP 790
            PV  NDV F++HA L   IT+ Q   YER  Q VS   +A++ +V ++   C   A  L     L  +   + I++ +T  KY PQA  N+ RKST G+SIGNI+LDF GG  +  QMI+Q+++ N W  FY N  K             F+ QHYVLYP
Sbjct:  202 PVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALM-IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360          
BLAST of CX043825 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.180e-23
Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = -1
Query:  227 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVS-KISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 790
            PV  NDV F++HA L   +T+ Q   YER  Q++S K  + I+ +V           L   + L  +   + I++ +T  KY PQA  N++RKST G+SIGNILLDF GG  +  QM++Q+I+ N W  FY N  K             F+ QHY LYP  +   +     D    + +++ ++H  ++N
Sbjct:  201 PVLLNDVVFAVHAFLACFVTILQCIFYERDQQRISTKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390          
The following BLAST results are available for this feature:
BLAST of CX043825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CTNS_ARATH1.011e-6164.13Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DICDI5.411e-3140.24Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_HUMAN1.247e-2742.41Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_BOVIN1.247e-2739.75Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_MOUSE4.740e-2742.24Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_DROME4.740e-2737.97Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
CTNS_CAEEL1.427e-2340.63Cystinosin homolog OS=Caenorhabditis elegans GN=ct... [more]
CTNS_CAEBR3.180e-2334.21Cystinosin homolog OS=Caenorhabditis briggsae GN=c... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13F08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F08-L15-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043825 ID=CX043825; Name=CX043825; organism=Citrus sinensis; type=EST; length=802bp
TTTTAACACTAGTATATGGTTTAAAATTAATAGCTTTAACCAATTACAGG
AATCATATTTGATAGTAATTTCTAATTCCAGAACATGACTGTTTCTTCCT
ATACACAAGTAAGAAAATCATACAAATTGCTGATGTGGTGTGCATGCAGC
AACAATATGGTTTGATTTCTATGTGGTGTAAATAGATTGCGTCCTCACAA
ATTGTGTTGGCATTTCACCTTTATACATTTTCTGACTCTGGGTGATCAGA
AGACTTAAGAAGTGGCTCTACACCACCATCTTTGCTAAGTTTAGAAGAGA
TTACCGCTTTCTTGGCAGGATATAGCACATAATGCTGACATATGAAAAGA
AGATCAAAGACTACGGATACCAGAGATAGCAATGTCTTCCCTATATTTCC
ATAAAAGTTAACCCAAGAATTTTGATCAATAGACTGAACAATCATCTGTG
AGTAATTAGTACACCCTCCAAGAAAATCAAGTAATATATTTCCAATGCTG
AAACCATCTGTACTCTTTCGCCTAAAGTTCATGATGGCCTGTGGAATATA
CTTGATGAGTGTCATAATAACTTGAATAGCGTTAAAGAAGTTGATGAGCC
AAAGCCAAGAATGGTTTGGCAATGCTACGAAGAAACAAACTGCGGCAGCC
AACCAAACAACAGAGACAATTGCCATAGAAATCTTAGATACCTTCTGAAC
ACCACGTTCATAGATTGCAATTTGGAACAGGGTAATTATTGTCAAGAGAA
CAGCATGCATTGAAAACGCAACATCATTTGCTGCTACGGGAATCATCTGA
TC
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