CX043811

Overview
NameCX043811
Unique NameCX043811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6379 contig Csv1_Contig6379:617..1310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47
Identity = 87/134 (64.93%), Postives = 110/134 (82.09%), Query Frame = 1
Query:    1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402
            V+ +I++ HL+VGLKGQPP++DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  199 VVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332          
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.569e-46
Identity = 87/134 (64.93%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402
            V+ +I++ HL+VGLKGQ P+IDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  199 VVVDIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332          
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.662e-46
Identity = 87/134 (64.93%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402
            ++ +I++ HL+VGLKGQP IIDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  198 MVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331          
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.089e-46
Identity = 86/134 (64.18%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402
            V+ +I++ HL+VGLKGQP I+DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+A+ +
Sbjct:  199 VVVDIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKARFN 332          
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.772e-45
Identity = 86/134 (64.18%), Postives = 108/134 (80.60%), Query Frame = 1
Query:    1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402
            V+ +I++  L+VGLKG PP+IDGEL   VK ++  W IED KTV++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQ+ILKKFM +HPEMDFS+AK +
Sbjct:  208 VVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN 341          
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 74/136 (54.41%), Postives = 93/136 (68.38%), Query Frame = 1
Query:   13 IKKNHLKVGLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKI 399
            +KK+ +KV +KG+     IDG+    +KP +  W++E       K VSI L K NQMEWW  ++   P+ID  K+ PENS LSDLD ETR+ VEKMM+DQRQK MG P+SDE +K +ILKKF  EHPEMDFS AKI
Sbjct:   62 LKKDSIKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAKI 197          
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   10 EIKKNHLKV-GLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402
            +I  +HL V  L     IIDG+L+  VK  DC W++E  K + I L K    EWW C+I+G  EID  +++P+NS LSD D ETR+ VEKM+++Q +K+ GLP++DE +KQ I + F  EHP+MDFS AK +
Sbjct:   40 KIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDEEEKQRIFETFKNEHPDMDFSNAKFN 171          
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   28 LKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAK 396
            +++ +  +  ++ G L   +  D+  W++E+Q+ + I L K N+MEWW C+IKG P ID   +EPENSKLSDLD ETR+TVEKMM +Q QK      +DE +++++L+ FM +HPE+DFS  +
Sbjct:   46 IQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQK-----RTDEQKRKDVLQNFMKQHPELDFSNVR 163          
The following BLAST results are available for this feature:
BLAST of CX043811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NUDC_MOUSE5.507e-4764.93Nuclear migration protein nudC OS=Mus musculus GN=... [more]
NUDC_RAT3.569e-4664.93Nuclear migration protein nudC OS=Rattus norvegicu... [more]
NUDC_HUMAN4.662e-4664.93Nuclear migration protein nudC OS=Homo sapiens GN=... [more]
NUDC_BOVIN6.089e-4664.18Nuclear migration protein nudC OS=Bos taurus GN=NU... [more]
NUDC_CHICK1.772e-4564.18Nuclear migration protein nudC OS=Gallus gallus GN... [more]
NUDC_EMENI2.400e-3454.41Nuclear movement protein nudC OS=Emericella nidula... [more]
NUDC_DICDI2.746e-3047.73Nuclear movement protein nudC OS=Dictyostelium dis... [more]
NUDC_SCHPO9.766e-2844.72Nuclear movement protein nudc OS=Schizosaccharomyc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13E11_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13E11-J21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043811 ID=CX043811; Name=CX043811; organism=Citrus sinensis; type=EST; length=694bp
GTTTTATGTGAGATAAAGAAGAACCATCTTAAAGTTGGACTCAAGGGGCA
GCCTCCCATAATTGATGGGGAGCTTCATATGGCCGTTAAGCCTGATGATT
GTTATTGGAGCATAGAGGACCAGAAAACTGTTTCTATTCTTTTGACCAAG
CAGAATCAGATGGAGTGGTGGAAGTGTCTGATAAAAGGAGGCCCTGAAAT
TGACACTCAGAAAGTTGAACCTGAGAACAGTAAATTATCTGACCTGGATC
CAGAGACTAGGTCGACTGTTGAAAAGATGATGTTTGACCAGAGGCAAAAG
TCCATGGGCCTGCCGAGCAGCGACGAGATGCAGAAACAGGAGATTTTGAA
GAAATTCATGGCTGAGCATCCAGAGATGGACTTCTCTAGAGCCAAGATCT
CATAAATAGTCTCCTTATTAGGATGTGCAGTGGATGCACGTCAAAAGTTT
CTAGTGGATTTCGAGTTTTGTTTTGCAGCCCCGCAAGCTTCTTATTAGAT
GTTTGAATTTTGTTTATATTTGTTAACAAGGATTGGACAATTGCTATCTA
ATTAGCATGGTGCGAGTCGATGCCTTCTGTGACATATTATTTTTATGTTG
TTTCTTCAGCTACACTTTCTTGTATAATACTTTTGTTTCGAGTCAAAACC
CACGAAAAAGCCAATTAAAGAAAGTGTTTTCTATATTTAAACCT
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