CX043811
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.507e-47 Identity = 87/134 (64.93%), Postives = 110/134 (82.09%), Query Frame = 1 Query: 1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402 V+ +I++ HL+VGLKGQPP++DGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+AK + Sbjct: 199 VVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 3.569e-46 Identity = 87/134 (64.93%), Postives = 109/134 (81.34%), Query Frame = 1 Query: 1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402 V+ +I++ HL+VGLKGQ P+IDGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+AK + Sbjct: 199 VVVDIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 4.662e-46 Identity = 87/134 (64.93%), Postives = 109/134 (81.34%), Query Frame = 1 Query: 1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402 ++ +I++ HL+VGLKGQP IIDGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+AK + Sbjct: 198 MVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.089e-46 Identity = 86/134 (64.18%), Postives = 109/134 (81.34%), Query Frame = 1 Query: 1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402 V+ +I++ HL+VGLKGQP I+DGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQEILKKFM +HPEMDFS+A+ + Sbjct: 199 VVVDIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKARFN 332
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.772e-45 Identity = 86/134 (64.18%), Postives = 108/134 (80.60%), Query Frame = 1 Query: 1 VLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402 V+ +I++ L+VGLKG PP+IDGEL VK ++ W IED KTV++ L K N+MEWW L+ PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQ+ILKKFM +HPEMDFS+AK + Sbjct: 208 VVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN 341
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34 Identity = 74/136 (54.41%), Postives = 93/136 (68.38%), Query Frame = 1 Query: 13 IKKNHLKVGLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKI 399 +KK+ +KV +KG+ IDG+ +KP + W++E K VSI L K NQMEWW ++ P+ID K+ PENS LSDLD ETR+ VEKMM+DQRQK MG P+SDE +K +ILKKF EHPEMDFS AKI Sbjct: 62 LKKDSIKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAKI 197
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30 Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1 Query: 10 EIKKNHLKV-GLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAKIS 402 +I +HL V L IIDG+L+ VK DC W++E K + I L K EWW C+I+G EID +++P+NS LSD D ETR+ VEKM+++Q +K+ GLP++DE +KQ I + F EHP+MDFS AK + Sbjct: 40 KIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDEEEKQRIFETFKNEHPDMDFSNAKFN 171
BLAST of CX043811 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28 Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1 Query: 28 LKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQEILKKFMAEHPEMDFSRAK 396 +++ + + ++ G L + D+ W++E+Q+ + I L K N+MEWW C+IKG P ID +EPENSKLSDLD ETR+TVEKMM +Q QK +DE +++++L+ FM +HPE+DFS + Sbjct: 46 IQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQK-----RTDEQKRKDVLQNFMKQHPELDFSNVR 163 The following BLAST results are available for this feature:
BLAST of CX043811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043811 ID=CX043811; Name=CX043811; organism=Citrus sinensis; type=EST; length=694bpback to top |