CX043702
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.442e-32 Identity = 72/134 (53.73%), Postives = 93/134 (69.40%), Query Frame = 2 Query: 287 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLTTLPVSLASQRPRRPVS-ISAVQTLEENPA------PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658 MS VNL +W T + NQA+ RS PF L +L +S A ++ RP+S +SA+ T EE P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHES+RYSLLAGGKRVRP LCLAAC+LVG Sbjct: 1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVG 134
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23 Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 2 Query: 353 RSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658 +S P +T P+SL +R S S++ T E+N + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE++RYSLLAGGKRVRPVLC+AAC+LVG Sbjct: 24 QSRSRSPPSLITLKPISLTPKRTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVG 127
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.089e-21 Identity = 60/139 (43.17%), Postives = 86/139 (61.87%), Query Frame = 2 Query: 278 LTKMSCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLTTLPVS-------LASQRPRRPVSISAVQTLEENPA-----PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658 + M+ V+L A Q C +FNQ S +S F +P+ L +RP P+++SA+ T +E+ F+FK Y+ +KA +VN+ALD A+ +K+P IHE++RYSLLAGGKRVRP+LCLAAC+LVG Sbjct: 1 MRSMNLVDLWA-QQACLVFNQTLSYKS-----FNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVG 133
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20 Identity = 63/137 (45.99%), Postives = 83/137 (60.58%), Query Frame = 2 Query: 287 MSCVNLAAWT--------QTCSIFNQASSRRSNKTQPFRTLTTLPVSLASQRP---RRPVSISAVQTLEENPAPSP--TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658 M+ V L +W SI ++ SR T T P+S S+R + S+V T E+N S +FDF SY+I KA VN+ALD+AV L++P+KIHE++RYSLLAGGKRVRPVLC+AAC+LVG Sbjct: 1 MASVTLGSWIVVHHHNHHHPSSILTKSRSRSCPIT------LTKPISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVG 131
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.793e-20 Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = 2 Query: 353 RSNKTQPFRTLTTLPVSL-ASQRPRRPV------SISAV----QTLEENPAPSP---------TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658 RSN P + LP+S S R+P+ SISA+ QT EE+ + S +FDFK+YMI KA++VN+AL+ AV +++P+KIHES+RYSLLAGGKRVRP+LC+AAC+L G Sbjct: 2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFG 121
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.658e-18 Identity = 45/106 (42.45%), Postives = 72/106 (67.92%), Query Frame = 2 Query: 341 ASSRRSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658 A++RR + + + ++ +++ R S+++ + E +FDFK YMI KA T+N+ALD A+ L +P+ IH+++RY++LAGGKRVRP+LCLAAC+LVG Sbjct: 31 ANTRRLIRLLHIPIKSPVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVG 136
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17 Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 2 Query: 326 SIFNQASSRRSNKTQPFRTLTTL----PVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658 S+F Q+ RR N ++L P S + + R + + + N A FDFK YMI+KA +VN ALD +V L++P+ + E+VRYSLLAGGKRVRP+LC+A C+LVG Sbjct: 11 SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCNDHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVG 121
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15 Identity = 35/59 (59.32%), Postives = 51/59 (86.44%), Query Frame = 2 Query: 482 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658 TF+F YM+ KA +VN+AL+ A+ + +P+KIHE++RY++LA GKRVRP+LCLA+C+LVG Sbjct: 82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVG 140
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11 Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 416 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLKDPV-KIHESVRYSLLAGGKRVRPVLCLAACDLVG 658 RPR + +SA++ + + S +F SYM KA ++N+ALD + V L +PV ++H+++RY+LL GGKRVRP+LCL AC+LVG Sbjct: 2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVG 95 The following BLAST results are available for this feature:
BLAST of CX043702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043702 ID=CX043702; Name=CX043702; organism=Citrus sinensis; type=EST; length=658bpback to top |