CX043555
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 8.116e-59 Identity = 108/176 (61.36%), Postives = 144/176 (81.82%), Query Frame = -1 Query: 280 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 807 M EDNQQL++ KN+ K Q +KALE + S+VSEK R+T+EEN+IV+ +TKM HEQ KEEM+FQEQ FKDQI+IIH+AR +E+NFEK QQ++RE VKQS AN + ED++ RAE++AKFI +QDKEMEEFV R+ L++ H +++ A+RR++WEEEVELE+ FD EL++LMEKYS Sbjct: 445 MREDNQQLIWFKNKAAKHQMQAKALEESLSLVSEKHRQTLEENKIVRLKTKMHHEQIKEEMEFQEQFFKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIKLQDKEMEEFVEERENLMRTHDDRIAALRRKYWEEEVELERKFDLELSKLMEKYS 620
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.255e-51 Identity = 103/181 (56.91%), Postives = 132/181 (72.93%), Query Frame = -1 Query: 274 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKV---KQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 807 +SEDNQQL Y KN++ K+ +H+K LE + I+SEKLR T E+NRIV+QRTKMQHEQN+EEMD ++ F D I+ IHE RD KEENFE LQQQER KV +Q NP + +D ++RAEE++ FI Q+KEMEEFV R+ LIK +KM+ M++RH EE +LEK FD L QLM K+ H Sbjct: 441 ISEDNQQLNYFKNKLSKQNKHAKVLEESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFDEALEQLMYKHGLH 621
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.029e-45 Identity = 93/179 (51.96%), Postives = 129/179 (72.07%), Query Frame = -1 Query: 271 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 807 MSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI IH+A +EKE FEKL Q+ER K +QS + +TED ++R E+I FI Q K++EEF A RD+LIKLH EK +++ + +E ELEK D LT LM+K+ I Sbjct: 422 MSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPDI 600
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 5.107e-45 Identity = 92/179 (51.40%), Postives = 128/179 (71.51%), Query Frame = -1 Query: 271 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 807 MSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI IH+ +EKE FEKL Q+ER K +QS + +TED ++R E+I FI Q K++EEF A RD+LIKLH EK +++ + +E ELEK D LT LM+K+ I Sbjct: 422 MSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTALMDKHKPDI 600
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.591e-38 Identity = 82/184 (44.57%), Postives = 123/184 (66.85%), Query Frame = -1 Query: 256 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAA 807 MSEDNQQL YLKN++VK ++ SKA+E + +V++KLRET+EEN V+ + K +H + +EEM QE++F I IH+A ++KE+ FEKL Q+ER K ++ + +D + R E + KFI Q K++ EF RD LIK+H +K +++ + + E+ELEK FDA LT LMEK+ E ++ Sbjct: 410 MSEDNQQLNYLKNKMVKTEQRSKAVEESLGVVTQKLRETIEENIFVRSKAKEKHMEYEEEMKSQEEIFHGLIEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELIKVHEDKKLKLKKEYMDLELELEKEFDAALTGLMEKHKPDTFEASS 593 The following BLAST results are available for this feature:
BLAST of CX043555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043555 ID=CX043555; Name=CX043555; organism=Citrus sinensis; type=EST; length=807bpback to top |