DC900216

Overview
NameDC900216
Unique NameDC900216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:351..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.816e-24
Identity = 53/62 (85.48%), Postives = 53/62 (85.48%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP         NQWAFE
Sbjct:  110 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP         NQWAFE
Sbjct:   99 FELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   91 FELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.631e-21
Identity = 48/62 (77.42%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   91 FELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:  101 FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:  101 FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:  101 FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:  101 FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:  101 FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC900216 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 FDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 187
            F+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:  101 FELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
The following BLAST results are available for this feature:
BLAST of DC900216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
SKP1B_ARATH7.816e-2485.48SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH5.601e-2280.65SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK11_ARATH1.248e-2179.03SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH3.631e-2177.42SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_XENLA5.796e-1972.58S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT5.796e-1972.58S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB5.796e-1972.58S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE5.796e-1972.58S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA5.796e-1972.58S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN5.796e-1972.58S-phase kinase-associated protein 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionDC900216 VSS Citrus sinensis cDNA clone VS28252 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900216 ID=DC900216; Name=DC900216; organism=Citrus sinensis; type=EST; length=405bp
CTTCGATCTCATCCTGGCTGCAAACTACCTGAACATCAAGGGGCTGCTGG
ACCTTACCTGCCAGACTGTTGCTGACATGATCAAGGGAAAGACTCCGGAG
GAGATTCGAAAGACCTTTAACATCAAGAATGACTTCACTCCAGAGGAGGA
AGAAGAGGTCCGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTGTTTC
AACAAAGACAATTTGTCATTATCATTGTCTTGCAATCTTGCTGTCTTTAA
CATGTAGATGTAGTTTTTTAGGGCTTATCTTTTCCTTTCTCATTGTACTT
TCGAACTTATTAGCTGTTTGAAATGTAAATAATAGTCGGTTCTGGTGGAA
CTGGTAGCAGTTGGTCTGGTCCATCCTTTCCTGCTTGCTATCAAGACCGT
TGGAT
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