DC900169
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: PSMD1_DICDI (26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 5.644e-26 Identity = 76/229 (33.19%), Postives = 109/229 (47.60%), Query Frame = 3 Query: 6 FSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVDXXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPS-GFVLLRDLRPNEPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXXMAVD------EEPQPPAPFEYT 671 F QFWYW+P+ +F+ LA +PT++IGLN +L++P F F S+ +PSLF YP T TT+S K+ A+LS S + K K + EK+ + FE NPAR+VP Q ++++F +D+RY P+K +P+ G V+LRDL PNEPE L + + A EP P PFE+T Sbjct: 755 FLQFWYWFPMTHFMGLALTPTSIIGLNKNLEMPVFTFKSNCRPSLFAYPPETKPSTTSSTNKIETAILSYSRKNKLQSSRSAMNIDQDVEKKEKEE--KEAKEKEAKEKE------EKEAAKAEEKEPLFERKSNPARIVPRQLQYVQF-DDARYQPIKKSPAIGIVMLRDLTPNEPEQLVVKEKPETKQETVGNQSGTATATASLPNATTTTSPTLPEPSTPEPFEFT 974
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: PSMD1_CHICK (26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 8.150e-25 Identity = 72/228 (31.58%), Postives = 105/228 (46.05%), Query Frame = 3 Query: 3 VFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVD-----XXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRDLRPNEPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXXMAVDEEPQPPAPFEY 668 VF+QFW+W+PL +F+SLAF+PT +IGLN DLK+P+ ++ S+ KPS F YP P VP K+ AVLS + K K +K+ + M+VD +F++L NPARV+PAQ K + E RY P K + G ++L+D + E++ ++EP+PP PFEY Sbjct: 765 VFTQFWFWFPLSHFLSLAFTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPPPLEVPKEKEKEKVSTAVLSIT-----------------------AKAKKKEKEKEKEKKEEEKMEVDETEKKDEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMTESCRYQPFKPLSIGGIIILKDTSEDMEELVE-----------------PVAAHGPKIEEEEQEPEPPEPFEY 952
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: PSMD1_RAT (26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.816e-24 Identity = 71/228 (31.14%), Postives = 106/228 (46.49%), Query Frame = 3 Query: 3 VFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVD-----XXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRDLRPNEPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXXMAVDEEPQPPAPFEY 668 VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS F YP P VP K+ AVLS + + K K +K+ + M+VD +F++L NPARV+PAQ K + E RY P K + G ++L+D + E++ ++EP+PP PFEY Sbjct: 765 VFTQFWFWFPLSHFLSLAYTPTCIIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSIT-------------------------AKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMTETCRYQPFKPLSIGGIIILKDTSEDIEELVE-----------------PVAAHGPKIEEEEQEPEPPEPFEY 950
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: PSMD1_MOUSE (26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.816e-24 Identity = 71/228 (31.14%), Postives = 106/228 (46.49%), Query Frame = 3 Query: 3 VFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVD-----XXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRDLRPNEPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXXMAVDEEPQPPAPFEY 668 VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS F YP P VP K+ AVLS + + K K +K+ + M+VD +F++L NPARV+PAQ K + E RY P K + G ++L+D + E++ ++EP+PP PFEY Sbjct: 765 VFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSIT-------------------------AKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMTETCRYQPFKPLSIGGIIILKDTSEDVEELVE-----------------PVAAHGPKIEEEEQEPEPPEPFEY 950
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: PSMD1_PONAB (26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 5.282e-24 Identity = 71/228 (31.14%), Postives = 106/228 (46.49%), Query Frame = 3 Query: 3 VFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVD-----XXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRDLRPNEPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXXMAVDEEPQPPAPFEY 668 VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS F YP P VP K+ AVLS + + K K +K+ + M+VD +F++L NPARV+PAQ K + E RY P K + G ++L+D + E++ ++EP+PP PFEY Sbjct: 765 VFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSIT-------------------------AKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELVE-----------------PVAAHGPKIEEEEQEPEPPEPFEY 950
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: PSMD1_HUMAN (26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 5.282e-24 Identity = 71/228 (31.14%), Postives = 106/228 (46.49%), Query Frame = 3 Query: 3 VFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVD-----XXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRDLRPNEPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXXMAVDEEPQPPAPFEY 668 VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS F YP P VP K+ AVLS + + K K +K+ + M+VD +F++L NPARV+PAQ K + E RY P K + G ++L+D + E++ ++EP+PP PFEY Sbjct: 765 VFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSIT-------------------------AKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRYQPFKPLSIGGIIILKDTSEDIEELVE-----------------PVAAHGPKIEEEEQEPEPPEPFEY 950
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: RPN2_SCHPO (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe GN=rpn2 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.101e-21 Identity = 63/190 (33.16%), Postives = 95/190 (50.00%), Query Frame = 3 Query: 3 VFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVDXXXXXXXXXXXS-------FEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNE-PEVLSL 548 VF Q+WYW+PL +F+SL+FSPTALIGL+ +L P+F F+S+ +P LF YP + PT + K+ AVLST+ + K++ EK+ M++D + E L N RVVPAQ +I F + RY PV+ G ++L D ++ P+++ L Sbjct: 748 VFLQYWYWFPLTHFMSLSFSPTALIGLDKNLNAPKFSFISNVRPKLFAYPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRAEREKASKGSNDDEMKIDK----KTTEEKEATPMEMDEEKSQDISINGNSKKEEPKSETLENFTRVVPAQLPYISFNLNGRYYPVRKFTGGVLMLIDRESDKAPDLIEL 933
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: RPN2_ASHGO (26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii GN=RPN2 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.944e-18 Identity = 56/180 (31.11%), Postives = 89/180 (49.44%), Query Frame = 3 Query: 3 VFSQFWYWYPLIYFISLAFSPTALIGL-NYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVDXXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVK--SAPSGFVLLRDLRPNEP 533 +F+QFWYW+PL +F+SL+F+PT IG+ ++DLK+P+F F H K +F+YP S K+ AVLST+ ++ + + E D D + + ++ + N RVVP Q K+I F +D R+ PV+ +G ++L D P+EP Sbjct: 727 MFTQFWYWFPLAHFLSLSFTPTTTIGVRSHDLKIPKFSFHCHTKEGIFDYPPMFEEDIDKSIEKVATAVLSTT-AKAKARAKKSKKDKAVEPDKSKEEIKVENEQRDKKEHDADVPEEE----FKIKYTSTYYKVENMTRVVPQQLKYIAFPKDERFTPVRKFKGSNGVIVLSDKTPDEP 901
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: RPN2_YEAST (26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae GN=RPN2 PE=1 SV=4) HSP 1 Score: 89.7373 bits (221), Expect = 3.667e-17 Identity = 52/183 (28.42%), Postives = 89/183 (48.63%), Query Frame = 3 Query: 3 VFSQFWYWYPLIYFISLAFSPTALIGL-NYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVDXXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVK--SAPSGFVLLRDLRPNEPEVL 542 +FSQFWYW+PL +F+SL+F+PT +IG+ D +P+F+ +AK F YP+ + K+ AVLST+ + +++ + ++ + D +++ N R++P Q ++I F++D R+VPV+ +G V+LRD P EP L Sbjct: 735 MFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKV-DNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVVLRDREPKEPVAL 916
BLAST of DC900169 vs. ExPASy Swiss-Prot
Match: RPN2_CANGA (26S proteasome regulatory subunit RPN2 OS=Candida glabrata GN=RPN2 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 8.169e-17 Identity = 51/182 (28.02%), Postives = 91/182 (50.00%), Query Frame = 3 Query: 3 VFSQFWYWYPLIYFISLAFSPTALIGL-NYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTS--XXXXXXXXXXXXXXXXXXXXXXXTDLSSAGKGKSSNEKDGDSMQVDXXXXXXXXXXXSFEILINPARVVPAQEKFIKFLEDSRYVPVK--SAPSGFVLLRDLRPNEP 533 +F+QFWYW+P+ +F+SL+F+PT ++G+ DL +P+F+ +A+ +F YPK K+ A+LST+ DL K +K+ ++ + D E N +RV+P Q K+++F+++ R+ PV+ +G V+L+D +P+EP Sbjct: 732 MFTQFWYWFPMAHFLSLSFTPTTIVGVRGSDLNIPKFDMNCYAREDVFSYPKMFEESADKEVEKVATAILSTTARAKARAKKTKKEKDTNEDDKKKKEKDLKKEETKKDDAKKESEA-EEDFNKNRYSSKPYKIE---NMSRVLPQQLKYVQFIKEERFTPVRKFKGTNGVVVLKDNKPSEP 909 The following BLAST results are available for this feature:
BLAST of DC900169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900169 ID=DC900169; Name=DC900169; organism=Citrus sinensis; type=EST; length=1213bpback to top |