CN186040
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1) HSP 1 Score: 375.17 bits (962), Expect = 1.862e-103 Identity = 178/222 (80.18%), Postives = 200/222 (90.09%), Query Frame = 1 Query: 40 FRDSEPMGQSLKIR----VKTGTRKGFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 F S+ M LKIR + K F P KVVC+DYPRP++DNT N+LEAA+LSSSFR+SPRP+KPL++VIAGAGL GLSTAKYLADAGHKP+LLEARDVLGGKVAAWKD DG+WYETGLHIFFGAYPN+QNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPE LPAPLNGILAIL+NNEMLTWPEKVKFAIGLLPA++GGQ+YVEAQDG++V++W Sbjct: 44 FGGSDSMSHRLKIRNPHSITRRLAKDFRPLKVVCIDYPRPELDNTVNYLEAAFLSSSFRSSPRPTKPLEIVIAGAGLGGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEALPAPLNGILAILKNNEMLTWPEKVKFAIGLLPAMLGGQSYVEAQDGISVKDW 265
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1) HSP 1 Score: 374.015 bits (959), Expect = 4.149e-103 Identity = 179/229 (78.17%), Postives = 201/229 (87.77%), Query Frame = 1 Query: 10 SESAFNLRYGFRDSEPMGQSLK-IRVKTGTRKGFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 + S + + F S+ MG +L+ ++ R F P +VVCVDYPRP+++NT NF+EAAYLSS+FR SPRP KPL +VIAGAGLAGLSTAKYLADAGHKP+LLEARDVLGGKVAAWKD DG+WYETGLHIFFGAYP +QNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLP+PLNGI AILRNNEMLTWPEKVKFAIGLLPA++GGQ YVEAQDGL+VQEW Sbjct: 25 ASSDATISFSFGGSDSMGLTLRPAPIRAPKRNHFSPLRVVCVDYPRPELENTVNFVEAAYLSSTFRASPRPLKPLNIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDKDGDWYETGLHIFFGAYPYVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQEW 253
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1) HSP 1 Score: 373.244 bits (957), Expect = 7.076e-103 Identity = 178/222 (80.18%), Postives = 198/222 (89.19%), Query Frame = 1 Query: 40 FRDSEPMGQSLKIRVKTGTR----KGFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 F SE MG LKIR T K P KVVC+DYPRP++DNT N+LEAA+LSS+FR SPRP+KPL++VIAGAGL GLSTAKYLADAGHKP+LLEARDVLGGKVAAWKD DG+WYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMP+KPGEFSRFDF E LPAPLNGILAIL+NNEMLTWPEKVKFAIGLLPA++GGQ+YVEAQDG++V++W Sbjct: 45 FAGSESMGHKLKIRTPHATTRRLVKDLGPLKVVCIDYPRPELDNTVNYLEAAFLSSTFRASPRPTKPLEIVIAGAGLGGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFSEALPAPLNGILAILKNNEMLTWPEKVKFAIGLLPAMLGGQSYVEAQDGISVKDW 266
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1) HSP 1 Score: 369.777 bits (948), Expect = 7.824e-102 Identity = 176/213 (82.63%), Postives = 197/213 (92.49%), Query Frame = 1 Query: 55 PMGQSLKIRVKTGTRKGFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 P Q+LK R + + G P +VVCVD PRP+++NT NFLEAA LS+SFR++PRP+KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK+AAWKD DG+WYETGLHIFFGAYPN+QNLFGELGINDRLQWKEHSMIFAMP+KPGEFSRFDFP+VLPAPLNGI AILRNNEMLTWPEK+KFAIGLLPA++GGQAYVEAQDGL+V+EW Sbjct: 37 PTSQALKTRTRRRSTAG--PLQVVCVDIPRPELENTVNFLEAASLSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPDVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAMVGGQAYVEAQDGLSVKEW 247
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1) HSP 1 Score: 356.681 bits (914), Expect = 6.854e-98 Identity = 174/223 (78.03%), Postives = 195/223 (87.44%), Query Frame = 1 Query: 37 GFRDSEPMGQSLKIRVK--TGTRKG--FCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 GFR SE +G L++ V +G R+ +VVC D PRP+++ NFLEAA LS+SFR+SPRP K L+VV+ GAGLAGLSTAKYLADAGHKP+LLE+RDVLGGK+AAWKD DG+WYETGLHIFFGAYPN+QNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGI AILRNNEMLTWPEKV+FAIGLLPA++GGQAYVEAQDGLTV EW Sbjct: 30 GFRSSECLGIQLQVPVPFYSGIRQSPRATSLQVVCKDCPRPELEGAVNFLEAAQLSASFRSSPRPEKGLEVVVVGAGLAGLSTAKYLADAGHKPILLESRDVLGGKIAAWKDKDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKVRFAIGLLPAMVGGQAYVEAQDGLTVTEW 252
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2) HSP 1 Score: 352.443 bits (903), Expect = 1.293e-96 Identity = 166/192 (86.46%), Postives = 179/192 (93.23%), Query Frame = 1 Query: 118 KVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 +VVC D+PRP ++NT NFLEA LSS FR S +P+KPL+VVIAGAGLAGLSTAKYLADAGHKP+LLEARDVLGGK+AAWKD DG+WYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPE LPAPLNGI AILRNNEMLTWPEKVKFA+GLLPA++GGQAYVEAQDG TV EW Sbjct: 68 QVVCQDFPRPPLENTINFLEAGQLSSFFRNSEQPTKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEW 259
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2) HSP 1 Score: 352.443 bits (903), Expect = 1.293e-96 Identity = 166/192 (86.46%), Postives = 179/192 (93.23%), Query Frame = 1 Query: 118 KVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 +VVC D+PRP ++NT NFLEA LSS FR S +P+KPL+VVIAGAGLAGLSTAKYLADAGHKP+LLEARDVLGGK+AAWKD DG+WYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPE LPAPLNGI AILRNNEMLTWPEKVKFA+GLLPA++GGQAYVEAQDG TV EW Sbjct: 68 QVVCQDFPRPPLENTINFLEAGQLSSFFRNSEQPTKPLQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMVGGQAYVEAQDGFTVSEW 259
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 9.263e-95 Identity = 164/192 (85.42%), Postives = 177/192 (92.19%), Query Frame = 1 Query: 118 KVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 +VVC D+PRP +++T N+LEA LSS FR S RPSKPL+VV+AGAGLAGLSTAKYLADAGHKP+LLEARDVLGGKVAAWKD DG+WYETGLHIFFGAYPNIQNLFGEL I DRLQWKEHSMIFAMPNKPGEFSRFDFPE LPAP+NGI AILRNNEMLTWPEKVKFAIGLLPA++GGQ YVEAQDGLTV EW Sbjct: 60 QVVCKDFPRPPLESTINYLEAGQLSSFFRNSERPSKPLQVVVAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELRIEDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPINGIWAILRNNEMLTWPEKVKFAIGLLPAMVGGQPYVEAQDGLTVSEW 251
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2) HSP 1 Score: 243.047 bits (619), Expect = 1.104e-63 Identity = 112/155 (72.26%), Postives = 132/155 (85.16%), Query Frame = 1 Query: 229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 ++VVIAGAGLAGL+ AKYLADAG P++LE RDVLGGK+AAWKD DG+WYETGLHIFFGAYPN+ LF EL I DRLQWKEHSMIF P KPG +SRFDFP++ PAP+NG++AILRNN+MLTWPEK++F +GLLPAI+ GQ+YVE D T EW Sbjct: 1 MRVVIAGAGLAGLACAKYLADAGFTPVVLERRDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWKEHSMIFNQPEKPGTYSRFDFPDI-PAPINGLVAILRNNDMLTWPEKIRFGLGLLPAIVQGQSYVEEMDKYTWSEW 154
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 1.350e-61 Identity = 110/155 (70.97%), Postives = 127/155 (81.94%), Query Frame = 1 Query: 229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 693 ++V IAGAGLAGLS AKYLADAGH P++ E RDVLGGKVAAWKD DG+WYETGLHIFFGAYPN+ LF EL I DRLQWK HSMIF P KPG +SRFDFP++ PAP+NG+ AIL NN+MLTW EK+KF +GLLPA+I GQ+YVE D + EW Sbjct: 1 MRVAIAGAGLAGLSCAKYLADAGHTPIVYERRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELNIEDRLQWKSHSMIFNQPTKPGTYSRFDFPDI-PAPINGVAAILSNNDMLTWEEKIKFGLGLLPAMIRGQSYVEEMDQYSWTEW 154 The following BLAST results are available for this feature:
BLAST of CN186040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186040 ID=CN186040; Name=CN186040; organism=Citrus sinensis; type=EST; length=695bpback to top |