CN185972

Overview
NameCN185972
Unique NameCN185972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:404..1267. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185972 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 447.203 bits (1149), Expect = 5.518e-125
Identity = 217/248 (87.50%), Postives = 239/248 (96.37%), Query Frame = -2
Query:  111 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTRF 854
            TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEVC+QALQ EEAKFKA DLASKPEGTGTPTKDFKALF+Q+TT+F
Sbjct:   78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEGTGTPTKDFKALFTQVTTKF 325          
BLAST of CN185972 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 1.506e-114
Identity = 203/248 (81.85%), Postives = 223/248 (89.92%), Query Frame = -2
Query:  111 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTRF 854
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AGVK IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK KAFDL SKPEGT TPTKDFKALFSQ+T+RF
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253          
BLAST of CN185972 vs. ExPASy Swiss-Prot
Match: Y2446_ARATH (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.090e-15
Identity = 77/254 (30.31%), Postives = 125/254 (49.21%), Query Frame = -2
Query:  123 VLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADD----LFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSM--GGTNLNHPLNSLGN-----GNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQI 851
            V V GA G+TG+ + ++L  R   +A +  VR  E K K    DD    +   D+ +    +  + G D+  ++             A G RP F   +   P +VD  G  N +DA +  GV++ VLV S+   G  +   LN         G  LV K +AE+Y+  SGI YTI+R GGL++ +     +++  +D L +    +I+R  VAEV ++AL  EE+ FK  ++ ++ E    P + +K LF+ +
Sbjct:   49 VFVAGATGQTGKRIVEQLLSRG--FAVKAGVRDVE-KAKTSFKDDPSLQIVRADVTEGPDKLAEVIGDDSQAVIC------------ATGFRPGF---DIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKN-DPPTGNVVMEPEDTLYE---GSISRDLVAEVAVEALLQEESSFKVVEIVARAE---APKRSYKDLFASV 277          
The following BLAST results are available for this feature:
BLAST of CN185972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2766_ARATH5.518e-12587.50Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH1.506e-11481.85Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
Y2446_ARATH6.090e-1530.31Uncharacterized protein At2g34460, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185972 ID=CN185972; Name=CN185972; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTTAGAATCTTCGGCATTCATTTATTCATTCCCCTTTTTAA
TCCATTGCATTACAGTTTTCTAACATAAAAACTCAGGAGGAGACTGGCGA
CTGAGACTCAGAAACGAGTAGTAATTTGAGAAAAGAGAGCTTTAAAATCC
TTTGTGGGTGTGCCAGTTCCCTCAGGCTTTGAGGCCAGATCAAATGCCTT
AAATTTGGCCTCCTCAAACTGTAGTGCCTGAATGCAGACTTCGGCAACAT
CGGCCCTGGCAATTGTCCTTGTTTCTGTCTGAAGAAGTTCATCATCCTTA
CCGACAAGCAATTCTCGGATACCACCTTCTTTATCCTGAAGGCCTCCGGC
CCTTATAATTGTGTATGGAATACCAGAGTCAGCCAAATACTGCTCAGCCT
TTCTTTTCCAAACCAATATATTGCCATTGCCCAAACTGTTCAAGGGATGA
TTAAGATTTGTTCCTCCCATCGATCCAACCAACACAATTTGCTTCACTCC
AGCAGCCTTAGCAGCATCAATTTGATTTTTCTGACCAATCCAATCAACCT
GTTCAGGATATGCACCCTCTTCAAAGTAGAACTCAGGCCTTCCACCTTTG
GCAGGATCAAAATCAGGTTTCATCTTTGGTACTGCACTTGTGAGAATTAT
GAGAGCATCGATTCCTTGGATTGCAGGAATGATGCTATTAGAGTCCCTTA
TGTCACCAATAAAAAGATCATCTGCTCCGCCAATTTTCTGCTTGCTCTCC
TCAGTTCTGACCAAACCTCTAGCAGCATATTGCTCTGACCTCTCCTTTAA
TTTCTTATAAACTATTTGACCGGTTCGACCACCAGCGCCGGTGACAAGAA
CGGTACTCTTAGCC
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