CN185954

Overview
NameCN185954
Unique NameCN185954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185954_ssr353 microsatellite CN185954_ssr353:353..367. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2511 contig Csv1_Contig2511:1..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185954 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 2 
Query:  437 VVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNR--GVVDTPKRSNLSRRIASLVRFREKRKERCFDKKNRYSVRKEVA 742
            VV        +LTLSF+G+VYVF  V+PEKVQAVLLLLGGR++P  +PT      Q+NR  G+  TP+R ++ +R+ASL+RFREKRK R FDK  RY+VRKEVA
Sbjct:   69 VVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVA 172
[Close]
BLAST of CN185954 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.649e-23
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 2 
Query:  437 VVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNR--GVVDTPKRSNLSRRIASLVRFREKRKERCFDKKNRYSVRKEVA 742
            VV   + +  +LTLSF+G+VYVF +V PEKVQAVLLLLGGR++P   P       Q+NR   +  TP+R ++ +R+ASLVRFREKRK R FDKK RY+VRKEVA
Sbjct:   73 VVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVA 176
[Close]
BLAST of CN185954 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:  464 SELTLSFEGEVYVFPAVTPEKVQAVLLLLGGR-DIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKNRYSVRKEVA 742
            ++LT+SF G+VYVF AV  +KV AVL LLGG  ++  G   +E+   Q++  VV+   R +L +R  SL RFR+KR  RCF+KK RY VR+EVA
Sbjct:   82 NQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVA 175
The following BLAST results are available for this feature:
BLAST of CN185954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT27_ARATH2.794e-2357.69GATA transcription factor 27 OS=Arabidopsis thalia... [more]
GAT25_ARATH3.649e-2357.69GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT26_ARATH1.485e-1650.00GATA transcription factor 26 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185954 ID=CN185954; Name=CN185954; organism=Citrus sinensis; type=EST; length=742bp
TTTTTAAAAACTTTTGCATTTTGTAATTCTACATCTTTATTTCCATTTTC
ACAGCTTCTCCGAGCTCGAAAACAATTCAATTTCAGAGCTAGGGTTTTTA
AACCTTCTTATCTCGCCCCAGAACACGAAAATGATGACCTCGCTTCAATA
AAACGACAGGTAATCATAATACTCGACTGAGAAACCAGAGTCTGTTATGG
CGGCGGCAAATCCACAGCCACTGCAAGCTCGGCCGTTTGAAGAACACGCG
CGAGCTCCACCGATACAGATCGAGGACGAGGATGGAGATTACGAGGACGG
CGAGGGCATGGATGACATAGACGAAGGAAACATTAATTCAATTAATATTA
TAAACAACAACAACAACAATAATAATACTAATAACAATAGTAATATTAGT
AATAATAGTTCGATGGTTAACGTGGCGGAGCATGGAGTAGTGGTGGCGGC
AGCTTCGAGGACAAGTGAGCTCACGCTCTCCTTTGAAGGCGAGGTTTATG
TGTTCCCTGCTGTTACTCCTGAAAAGGTGCAAGCTGTGCTCTTGCTTTTG
GGAGGACGTGATATACCTACTGGTGTACCTACAATCGAAGTGCCTTATGA
TCAGAGTAACAGGGGTGTGGTTGACACCCCCAAGCGCTCAAATCTTTCTC
GAAGAATAGCCTCCCTTGTTAGGTTTAGAGAAAAACGGAAGGAGAGATGT
TTTGACAAGAAAAATAGGTACAGCGTACGGAAAGAGGTTGCA
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