CN185573

Overview
NameCN185573
Unique NameCN185573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3241 contig Csv1_Contig3241:148..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185573 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.769e-89
Identity = 160/222 (72.07%), Postives = 186/222 (83.78%), Query Frame = 1
Query:    7 RSENSVTHESPYPLYAMAVC------GQRIAVGSFIEDYTNRVDVNSFEPQSLSVRTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGD--SSIEPVAVLNNSKSTEFCAPLTSFDWNEIEP*RIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDTEHSTIIYESPQPDTPLLRLAWNQQ 648
            RSE +VT++SPYPLYAMA        G RIAVGSF+EDY NR+D+ SF+  S++V+  P+LSF+HPYPPTKLMF P            LLASSGDFLRLW++ +  S++EP++VLNNSK++EFCAPLTSFDWN++EP R+GTCSIDTTCTIWDIEK VVETQLIAHDKEV+DI WGEARVFASVSADGSVRIFDLRD EHSTIIYESPQPDTPLLRLAWN+Q
Sbjct:   11 RSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPTKLMFSPPSLRRPSSGD--LLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ 230          
BLAST of CN185573 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.327e-65
Identity = 124/215 (57.67%), Postives = 156/215 (72.56%), Query Frame = 1
Query:   25 THESPYPLYAMAVCGQR-----IAVGSFIEDYTNRVDVNSFEPQSLSVRTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGD--SSIEPVAVLNNSKSTEFCAPLTSFDWNEIEP*RIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDTEHSTIIYESPQPDTPLLRLAWNQQ 648
            T+E+P+ +YAM    +R     +A+ S +E Y NRV++   +  +  +R+ P+LSF+HPYPPTK +F P            LLA+S DFLRLW + D  S +E  + LN++K++EFC PLTSFDWNE EP RIGT S DTTCTIWDIE+  V+TQLIAHDKEV+DI WG   VFASVSADGSVR+FDLRD EHSTIIYES +PDTPL+RL WN+Q
Sbjct:   23 TYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPD----LLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQ 233          
BLAST of CN185573 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.336e-63
Identity = 122/215 (56.74%), Postives = 153/215 (71.16%), Query Frame = 1
Query:   25 THESPYPLYAMAVCGQR-----IAVGSFIEDYTNRVDVNSFEPQSLSVRTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGD--SSIEPVAVLNNSKSTEFCAPLTSFDWNEIEP*RIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDTEHSTIIYESPQPDTPLLRLAWNQQ 648
            T+E+P+ +YAM    +R     +A+ S IE Y NRV++   +  +  +R+ P+L F+HPYPPTK  F P            LLA+S DFLRLW + D  S +E  + L++ K++EF  P+TSFDWNE EP RIGT SIDTTCTIWDIE+ VV+TQLIAHDKEVYDI WG   VFASVS DGSVR+FDLRD EHSTIIYES +P TPL+RL+WN+Q
Sbjct:   23 TYEAPWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNLCFEHPYPPTKTSFIPDKECQRPD----LLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQ 233          
BLAST of CN185573 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.259e-52
Identity = 114/227 (50.22%), Postives = 148/227 (65.20%), Query Frame = 1
Query:   28 HESPYPLYAMAVCGQ-----RIAVGSFIEDYTNRVDVNSFEPQSLSVRTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGDSSIEPVAVLNNSKSTEFCAPLTSFDWNEIEP*RIGTCSIDTTCTIWDIE-----------KGVVETQLIAHDKEVYDICWGEA----RVFASVSADGSVRIFDLRDTEHSTIIYESPQPDTPLLRLAWNQQ 648
            +E+P+ +YAM    +     R+A+GSF+E+Y N+V +   + +S       +  FDHPYP TKLM+ P            LLA+SGD+LR+W VG++      +LNN+K+++FCAPLTSFDWNE++P  +GT SIDTTCTIW +E            G V+TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WN+Q
Sbjct:   13 YEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNT--FDHPYPTTKLMWIPDTKGVYPD----LLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQ-HHPLLRLCWNKQ 232          
BLAST of CN185573 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.259e-52
Identity = 114/227 (50.22%), Postives = 148/227 (65.20%), Query Frame = 1
Query:   28 HESPYPLYAMAVCGQ-----RIAVGSFIEDYTNRVDVNSFEPQSLSVRTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGDSSIEPVAVLNNSKSTEFCAPLTSFDWNEIEP*RIGTCSIDTTCTIWDIE-----------KGVVETQLIAHDKEVYDICWGEA----RVFASVSADGSVRIFDLRDTEHSTIIYESPQPDTPLLRLAWNQQ 648
            +E+P+ +YAM    +     R+A+GSF+E+Y N+V +   + +S       +  FDHPYP TKLM+ P            LLA+SGD+LR+W VG++      +LNN+K+++FCAPLTSFDWNE++P  +GT SIDTTCTIW +E            G V+TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WN+Q
Sbjct:   13 YEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNT--FDHPYPTTKLMWIPDTKGVYPD----LLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQ-HHPLLRLCWNKQ 232          
BLAST of CN185573 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.464e-51
Identity = 112/216 (51.85%), Postives = 146/216 (67.59%), Query Frame = 1
Query:   25 THESPYPLYAMAVCGQ-----RIAVGSFIEDYTNRVDVNSFEPQSLSVRTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGDS--SIEPVAVLNNSKSTEFCAPLTSFDWNEIEP*RIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEAR-VFASVSADGSVRIFDLRDTEHSTIIYESPQPDTPLLRLAWNQQ 648
            T+ SP+ +Y ++   +     R+A+GSF+EDYTNRVDV     ++          F+HPYPPTK M+ P            LLA++GD+LRLW+VG +  SI+  ++L N  S EFCAPL+SFDWNE +P  + T SIDTTCTIW+IE G  +TQLIAHDKEV+DI +     +FASV ADGS+R+FDLR+ EHSTIIYE+P    PLLRL WN+Q
Sbjct:    8 TYNSPWVIYGLSWSSRVNRPFRLAIGSFLEDYTNRVDVIQLNEETDQFEV--VCGFEHPYPPTKCMWIPDKNSNRPD----LLATTGDYLRLWEVGSNQRSIKLKSLLTNVIS-EFCAPLSSFDWNETDPSLLATSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFASVGADGSLRMFDLRNLEHSTIIYETPS-FVPLLRLCWNKQ 215          
BLAST of CN185573 vs. ExPASy Swiss-Prot
Match: YBE8_SCHPO (Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe GN=SPBC17D11.08 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.129e-27
Identity = 86/211 (40.76%), Postives = 107/211 (50.71%), Query Frame = 1
Query:   76 IAVGSFIEDYTNRVDVNSF--EPQSLSVRTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVG-----DSSIEPVAVLNNSKSTEFCAPLTSFDWNEIEP*RIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDTEHSTIIYE---------------SPQPDTPLLRLA 636
            IA+GS  E+  N + +          S       + D  YP TKL+++P            LLAS+   LRLW        DS +   A L+    T   APLTSFDW + +P  I   S+DTTCT+WDI     +TQLIAHDKEVYD+ +      VF SV ADGSVR+FDLR  +HSTIIYE               SP    PLLRL+
Sbjct:   69 IAMGSLNEEPNNMIQLLKLITGDDGNSHLEKAQAATDLEYPVTKLLWNPSSVGSNTDS--QLLASTDQQLRLWKTDFEAGIDSPLLCQASLSTHVKTHNNAPLTSFDWCKTDPSYIVVSSLDTTCTVWDIVAQQSKTQLIAHDKEVYDVAFLKDSINVFVSVGADGSVRMFDLRSLDHSTIIYEGDSTFWKRNGDYTNASPPVSAPLLRLS 277          
BLAST of CN185573 vs. ExPASy Swiss-Prot
Match: YP247_YEAST (WD repeat-containing protein YPL247C OS=Saccharomyces cerevisiae GN=YPL247C PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.087e-22
Identity = 74/221 (33.48%), Postives = 108/221 (48.87%), Query Frame = 1
Query:   28 HESPYPLYAMA-VCGQRIAVGSFIEDYTNRVDVNSFEPQSLSVRTHPSLSF------DHPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGDSSIEPVAVLNNS------------------KSTEFCAPLTSFDWNEIEP*RIGTCSIDTTCTIWDIEKG-VVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDTEHSTIIYESP 606
            ++S YPL+ +       + +GS+ ED  N++ V         + ++  LS+      D  YP +K+ + P             LA+  D LR+W V     +    +N S                  K      P+TSFDWN ++   I + SIDTTC +WD++    V+TQLIAHD EV+D+ +     ++FAS   DGSVR+FDLR   HSTIIYE P
Sbjct:  125 YQSHYPLFGLDWSADDYVCLGSYKEDSRNKLQV---------LHSNDLLSWESVVDADVVYPVSKIQWVPSQLYPRK------LATCSDSLRIWSVSPEERQFQEQINLSLCKYNRQHPANPAAADDMKVIGTFPPITSFDWNTVDTNLIISSSIDTTCIVWDLQSSHYVKTQLIAHDSEVFDVRFLTKSTQLFASCGGDGSVRVFDLRSLAHSTIIYEPP 330          
The following BLAST results are available for this feature:
BLAST of CN185573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TTG1_ARATH1.769e-8972.07Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
LWD1_ARATH2.327e-6557.67WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
LWD2_ARATH6.336e-6356.74WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
DCAF7_MOUSE2.259e-5250.22DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN2.259e-5250.22DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
DCAF7_DICDI1.464e-5151.85DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
YBE8_SCHPO1.129e-2740.76Uncharacterized WD repeat-containing protein C17D1... [more]
YP247_YEAST7.087e-2233.48WD repeat-containing protein YPL247C OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185573 ID=CN185573; Name=CN185573; organism=Citrus sinensis; type=EST; length=649bp
ATTATCAGATCCGAGAACTCCGTGACCCATGAATCTCCTTACCCTCTCTA
CGCCATGGCTGTGTGCGGCCAACGCATCGCCGTCGGAAGCTTCATTGAAG
ACTACACCAATCGAGTCGACGTCAATTCATTCGAGCCACAATCTCTCTCT
GTCAGGACCCATCCCTCTCTCTCCTTTGACCACCCTTACCCACCCACCAA
GCTAATGTTTGATCCCAACTCTTCATCACGCAAATCCTCCTCCAACCGTC
ATCTGCTCGCTTCATCCGGCGACTTTCTTCGCCTTTGGGACGTTGGCGAT
TCATCAATCGAGCCCGTTGCCGTGCTCAACAACAGCAAGAGCACTGAGTT
TTGCGCTCCTTTGACTTCATTTGATTGGAACGAGATTGAACCCTAGAGAA
TTGGAACTTGTAGCATCGATACTACTTGCACTATCTGGGATATTGAAAAG
GGTGTTGTTGAAACTCAACTTATTGCTCATGACAAAGAGGTTTACGACAT
CTGCTGGGGTGAAGCTAGGGTTTTTGCTTCAGTTTCTGCTGATGGGTCAG
TGAGAATTTTCGATTTGAGAGACACAGAACATTCCACGATTATTTACGAG
AGCCCGCAACCCGACACCCCATTGCTTAGATTAGCTTGGAATCAGCAGG
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