CN185545

Overview
NameCN185545
Unique NameCN185545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:115..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.506e-58
Identity = 112/149 (75.17%), Postives = 123/149 (82.55%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD-------------DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VALESQTIKHM+EDDC D  IPLPNVTS ILSKVIEYCK+HVEA    +                 S+++DLKTWD++F+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:   23 VALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.079e-56
Identity = 107/139 (76.98%), Postives = 121/139 (87.05%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDK---STEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VALESQTI HMVEDDC D  +PLPNVTS IL+KVIEYCK+HVEA +   +  +   +++DDLK WDADF+K+DQ TLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:   22 VALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.329e-51
Identity = 100/140 (71.43%), Postives = 117/140 (83.57%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGS---GDKKDDKSTE-DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VA++SQTIKHM+EDDCAD  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    S E D+LK WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND++P+EE EVR EN+WAFE
Sbjct:   24 VAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.575e-50
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGS---GDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VA+ESQTIKHM+EDDC D  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    STE+ +LKTWD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND++P+EE EVR EN+WAFE
Sbjct:   24 VAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.256e-46
Identity = 92/136 (67.65%), Postives = 108/136 (79.41%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKKH        + +  +E+DL  WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   22 VAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHV-----DEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.120e-45
Identity = 92/137 (67.15%), Postives = 108/137 (78.83%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKK HV+  +        +E+DL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   22 VAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEAN------PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.369e-43
Identity = 86/138 (62.32%), Postives = 108/138 (78.26%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKV--DQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VA++SQTI HM+EDDC    +P+ NVT  ILSKVIEYCKKHV + S  ++    ++D+LK WDA+F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDF+P+EEEE+R+ENQWAFE
Sbjct:   21 VAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEE----SKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.513e-42
Identity = 86/136 (63.24%), Postives = 110/136 (80.88%), Query Frame = -3
Query:  228 VALESQTIKHMVED-DCADTVIPLPNVTSTILSKVIEYCKKHVEAGS--GDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 626
            +A  S TIK+M+ED   +D+ IPLPNVTSTIL KV++YC+ H +  S  GD K D+   DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:   20 IACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.976e-42
Identity = 86/136 (63.24%), Postives = 109/136 (80.15%), Query Frame = -3
Query:  228 VALESQTIKHMVED-DCADTVIPLPNVTSTILSKVIEYCKKHVEAGS--GDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 626
            +A  S TIK+M+ED   +D  IPLPNVTSTIL KV++YC+ H +  S  GD K D+   DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:   20 IACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.121e-40
Identity = 84/137 (61.31%), Postives = 104/137 (75.91%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VA + + ++HM+EDDC  T +PL NVT  ILS V+EYCKKHV        D++S  D+ KTWD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDF+P+EE  VR+EN WAFE
Sbjct:   22 VARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVV-------DEES--DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
The following BLAST results are available for this feature:
BLAST of CN185545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1B_ARATH1.506e-5875.17SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH1.079e-5676.98SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH2.329e-5171.43SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH2.575e-5070.00SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH2.256e-4667.65SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH1.120e-4567.15SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH1.369e-4362.32SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
SKP1A_DICDI1.513e-4263.24SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
SKP1B_DICDI1.976e-4263.24SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
ASK14_ARATH4.121e-4061.31SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185545 ID=CN185545; Name=CN185545; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTAGACAAGAAATGAAGATATAATGCAATAGACAA
GGGTTCAATGACATTTATATCGAGCAGCATTCACAGGTTCACGACAAAAG
GAAATGTTGATGTTCAATACTAGACACCTACTGGCAACATACTAAAAGAC
CACTATCATTATAACCACATTCCTATCACAAATATTAATGACCGAGCCTT
CATCACTTCAGTCCTTCACTCGAATGCCCATTGGTTCTCTCTCCGAACCT
CCTCTTCTTCATCGGGAGAGAAGTCATTCTTGATGTTGAAGGTCTTGCGG
ATCTCCTCTGGAGTCTTCCCCTTGATCATGTCTGCAACAGTTTGGCAGGT
CAAGTCCAGCAAACCCTTAATGTTCAGGTAATTGGCTGCCAAGATTAGGT
CAAAGAGGGTATTCTGATCAACCTTGACGAAGTCTGCATCCCAGGTCTTG
AGATCATCCTCGGTCGACTTGTCGTCCTTCTTGTCCCCTGACCCAGCCTC
AACGTGCTTCTTGCAGTACTCGATAACCTTCGAGAGAATCGTGCTCGTCA
CATTCGGCAGCGGGATTACGGTGTCGGCGCAGTCGTCCTCCACCATGTGC
TTGATTGTCTGCGACTCGAGGGCCACCGTCT
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