CN185501
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB2_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2) HSP 1 Score: 332.028 bits (850), Expect = 4.443e-94 Identity = 154/176 (87.50%), Postives = 160/176 (90.91%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E+DPSLTFRRS EGICGSCAMNIDGCNGLACLTKI +TITPLPHMFVIKDLVVDMTN YNQYKSIEPWLKRKNP +PGKEI QSKKDRAKLDGMYECILCACCSTSCPSYWW E+YLGPAALLHA WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP+ Sbjct: 87 IKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 262 HSP 2 Score: 34.6538 bits (78), Expect = 4.443e-94 Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQLQ 599 PKGLNPGKQI +IKQLQ Sbjct: 261 PKGLNPGKQITHIKQLQ 277
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB1_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1 SV=2) HSP 1 Score: 328.946 bits (842), Expect = 3.728e-93 Identity = 153/176 (86.93%), Postives = 159/176 (90.34%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E+DPSLTFRRS EGICGSCAMNIDGCNGLACLTKI S +TITPLPHMFVIKDLVVDMTN YNQYKSIEPWLKRK P +P KEI QSKKDRAKLDGMYECILCACCSTSCPSYWW E+YLGPAALLHA WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP+ Sbjct: 88 IKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 263 HSP 2 Score: 34.6538 bits (78), Expect = 3.728e-93 Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQLQ 599 PKGLNPGKQI +IKQLQ Sbjct: 262 PKGLNPGKQITHIKQLQ 278
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RICTY (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia typhi GN=sdhB PE=3 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 1.831e-65 Identity = 115/176 (65.34%), Postives = 134/176 (76.14%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+EID +LTFRRS EGICGSCAMNIDG N LAC+ I I PLPHM V+KDLV DM++ Y QY+SIEPWLK NP P + + QS +DR KLDG+YECILCACCSTSCPSYWW S+ YLGPA LL A WI+DSRD+ T RLEA++D FKLYRCHTI+NC + CP+ Sbjct: 66 IKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLPHMKVVKDLVPDMSHFYTQYESIEPWLKNDNPAPSNSERL-QSIQDREKLDGLYECILCACCSTSCPSYWWNSDKYLGPAILLQAYRWIADSRDDNTGARLEALEDPFKLYRCHTIMNCTKTCPK 240 HSP 2 Score: 25.0238 bits (53), Expect = 1.831e-65 Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQLQLKR 608 PKGLNP K I +K L +R Sbjct: 239 PKGLNPAKAIGRVKSLIAER 258
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RICBR (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhB PE=3 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.831e-65 Identity = 114/176 (64.77%), Postives = 135/176 (76.70%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+EID ++TFRRS EGICGSCAMNIDG N LAC+ I I PLPHM V+KDLV DM++ Y QY+SIEPWLK +P P + + QS KDR KLDG+YECILCACCSTSCPSYWW + YLGPA LL A WI+DSRD++T ERLEA++D FKLYRCHTI+NC + CP+ Sbjct: 66 IKNEIDSTVTFRRSCREGICGSCAMNIDGTNTLACIKPIEEISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPAPSNAERL-QSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDHTGERLEALEDPFKLYRCHTIMNCTKTCPK 240 HSP 2 Score: 25.409 bits (54), Expect = 1.831e-65 Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQLQLKR 608 PKGLNP K I IK L +R Sbjct: 239 PKGLNPAKAISEIKGLIAER 258
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RICCN (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia conorii GN=sdhB PE=3 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 2.388e-65 Identity = 115/176 (65.34%), Postives = 134/176 (76.14%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+EID +LTFRRS EGICGSCAMNIDG N LAC+ I I PLPHM V+KDLV DM++ Y QY+SIEPWLK +P P + + QS KDR KLDG+YECILCACCSTSCPSYWW + YLGPA LL A WI+DSRD+ T ERLEA++D FKLYRCHTI+NC + CP+ Sbjct: 66 IKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPTPSNSERL-QSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNTGERLEALEDPFKLYRCHTIMNCTKTCPK 240 HSP 2 Score: 25.409 bits (54), Expect = 2.388e-65 Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQLQLKR 608 PKGLNP K I IK L +R Sbjct: 239 PKGLNPAKAIGKIKSLIAER 258
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_CHICK (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 1.173e-64 Identity = 112/177 (63.28%), Postives = 135/177 (76.27%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E+D +LTFRRS EGICGSCAMNI G N LAC KI P S +T I PLPHM+V+KDLV D++N Y QYKSIEP+LK+K+ ++ QS +DR KLDG+YECILCACCSTSCPSYWW + YLGPA L+ A W+ DSRD+YT+ERL + D F LYRCHTI+NC R CP+ Sbjct: 89 IKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPK 265 HSP 2 Score: 27.7202 bits (60), Expect = 1.173e-64 Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQL 596 PKGLNPGK I IK++ Sbjct: 264 PKGLNPGKAIAEIKKM 279
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_DANRE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Danio rerio GN=sdhb PE=2 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 1.173e-64 Identity = 111/177 (62.71%), Postives = 137/177 (77.40%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E+D +LTFRRS EGICGSCAMNI+G N LACL KI + S T I PLPHM+V+KDLV DM+N Y QYKSIEP+LK+K+ ++ QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A W+ DSRD++T++RL + D F LYRCHTI+NC R CP+ Sbjct: 78 IKNEMDSTLTFRRSCREGICGSCAMNINGGNTLACLNKIDTNTSKVTKIYPLPHMYVVKDLVPDMSNFYAQYKSIEPYLKKKDESQQGKQQYLQSVEDRQKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEDRLSKLQDPFSLYRCHTIMNCTRTCPK 254 HSP 2 Score: 28.1054 bits (61), Expect = 1.173e-64 Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQLQL 602 PKGLNPGK I IK++ + Sbjct: 253 PKGLNPGKAIAEIKKMMV 270
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RICPR (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia prowazekii GN=sdhB PE=3 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 1.174e-64 Identity = 114/176 (64.77%), Postives = 133/176 (75.57%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+EID +LTFRRS EGICGSCAMNIDG N LAC+ I I PLPHM V+KDLV DM++ Y QY+SIEPWLK +P P + + QS KDR KLDG+YECILCACCSTSCPSYWW + YLGPA LL A WI+DSRD+ T RLEA++D FKLYRCHTI+NC + CP+ Sbjct: 66 IKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKNDSPAPSNSERL-QSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNTGARLEALEDPFKLYRCHTIMNCTKTCPK 240 HSP 2 Score: 25.0238 bits (53), Expect = 1.174e-64 Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQLQLKR 608 PKGLNP K I +K L +R Sbjct: 239 PKGLNPAKAIGRVKNLIAER 258
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_XENLA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus laevis GN=sdhb PE=2 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.995e-64 Identity = 110/177 (62.15%), Postives = 137/177 (77.40%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGS-ASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E+DP+LTFRRS EGICGSCAMNI+G N LAC +I + S S I PLPHM+V+KDLV D++N Y QYKSIEP+LK+K+ ++ QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A W+ DSRD++T+ERL + D F LYRCHTI+NC R CP+ Sbjct: 81 IKNEVDPTLTFRRSCREGICGSCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDKSQQGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEERLSKLQDPFSLYRCHTIMNCTRTCPK 257 HSP 2 Score: 27.7202 bits (60), Expect = 1.995e-64 Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQL 596 PKGLNPGK I IK++ Sbjct: 256 PKGLNPGKAIAEIKKM 271
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_XENTR (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus tropicalis GN=sdhb PE=2 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 2.601e-64 Identity = 111/177 (62.71%), Postives = 137/177 (77.40%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGS-ASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E+DP+LTFRRS EGICGSCAMNI+G N LAC +I + S S I PLPHM+V+KDLV D++N Y QYKSIEP+LK+K+ ++ QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A W+ DSRD+YT+ERL + D F LYRCHTI+NC R CP+ Sbjct: 83 IKNEMDPTLTFRRSCREGICGSCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDYTEERLAKLQDPFSLYRCHTIMNCTRTCPK 259 HSP 2 Score: 27.7202 bits (60), Expect = 2.601e-64 Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQL 596 PKGLNPGK I IK++ Sbjct: 258 PKGLNPGKAIAEIKKM 273 The following BLAST results are available for this feature:
BLAST of CN185501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 49
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185501 ID=CN185501; Name=CN185501; organism=Citrus sinensis; type=EST; length=768bpback to top |