CN185373

Overview
NameCN185373
Unique NameCN185373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.157e-55
Identity = 111/150 (74.00%), Postives = 121/150 (80.67%), Query Frame = 3
Query:   84 GNSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCI----XXXXXXXXXXXXIDPDDKPFLLQNNLPHQYLNFTSSSNN 521
            G+SPCASCKLLRRRC KDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV+SLV+EANARVRDPVYGCVGAIS+LQNQVSQLQMQLAVA+AEILCI                +D D K  LL NN     +N  +++NN
Sbjct:    5 GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQVLELDQDHKALLLNNN----NINNCNTNNN 150          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 83/111 (74.77%), Postives = 97/111 (87.39%), Query Frame = 3
Query:   66 SQRKMGGNSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 398
            S RK G  SPCA+CKLLRRRC +DC+F+PYFP D+P KFA VH+VFGASNV+KMLQELP+HQR DAVSS+VYEANARVRDPVYGCVGAIS LQ Q+  LQ QLA+A+AE++
Sbjct:    4 SSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVV 114          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.678e-38
Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 3
Query:   87 NSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            NSPCA+CK LRR+C   CIFAPYFPP++PHKFA VHK+FGASNV+K+L EL  HQR DAV+SL YEA ARVRDPVYGCVGAIS+LQ QV +LQ +L  A A++
Sbjct:    9 NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = 3
Query:   90 SPCASCKLLRRRCTKD-CIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCI 404
            SPCA CKLLRR+C KD C+FAPYFP  +P+KFAIVHK+FGASNV+KMLQEL  + R+DAV S+VYEANAR++DPVYGCVG IS L  Q+  LQ QLA A+AE++ I
Sbjct:   13 SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHI 118          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 3
Query:   90 SPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 398
            +PCA+CKLLRRRC ++C F+PYF P +PHKFA VHKVFGASNVSKML E+P  QRADA +SLVYEAN R+RDPVYGC+GAIS LQ QV  LQ +L    +EIL
Sbjct:   44 TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.397e-37
Identity = 69/104 (66.35%), Postives = 86/104 (82.69%), Query Frame = 3
Query:   87 NSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 398
            NSPCA+CK LRR+CT DC+FAPYFPP++P KFA VH++FGASNVSK+L E+  HQR DAV+SL YEA AR++DPVYGCVGAIS LQ QV +LQ +L    A+++
Sbjct:   37 NSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.202e-36
Identity = 70/103 (67.96%), Postives = 83/103 (80.58%), Query Frame = 3
Query:   90 SPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 398
            SPCA+CK+LRRRC + C+ APYFPP DP KF I H+VFGASN+ K LQELP  QR DAV+S+VYEA AR+RDPVYGC GAI  LQ QVS+LQ QLA A+ E++
Sbjct:   32 SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMV 134          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 69/103 (66.99%), Postives = 85/103 (82.52%), Query Frame = 3
Query:   87 NSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            NSPCA+CK LRR+C  +C+FAPYFPPD P KFA VHKVFGASNV+K+L EL   QR DAV+SL YEA+ R+RDPVYGCVG IS LQ+Q+ QLQ+ L+ A++E+
Sbjct:    7 NSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSEL 109          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.968e-36
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 3
Query:   90 SPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 398
            SPCA+CK+LRRRC   C+ APYFPP DP KF I H+VFGASN+ K LQELP  QR DAV+S+VYEA AR+RDPVYGC GAI  LQ QVS+LQ QLA  + E++
Sbjct:   51 SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELV 153          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.962e-35
Identity = 77/163 (47.24%), Postives = 100/163 (61.35%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCIXXXXXXXXXXXXIDPDDKPFLLQNNLPHQYLNFTSSSNNVIHDSL-KRETIFGHD 566
            G  SPCA+CK LRR+C  DC+FAPYFPPD+P KF  VH+VFGASNV+K+L EL   QR DAV+SL YEA+ R+RDPVYGCVG IS LQ+ + QLQ  LA A+ E+                 P      + N +P+   NF +  ++    SL    ++FG +
Sbjct:   29 GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAPTGPQAMAEFIGNAMPNGAHNFINIGHSAALGSLGGSASVFGQE 191          
The following BLAST results are available for this feature:
BLAST of CN185373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
LBD12_ARATH1.157e-5574.00LOB domain-containing protein 12 OS=Arabidopsis th... [more]
LBD4_ARATH7.033e-4574.77LOB domain-containing protein 4 OS=Arabidopsis tha... [more]
LOB_ARATH1.678e-3870.87Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis th... [more]
LBD3_ARATH4.133e-3768.87LOB domain-containing protein 3 OS=Arabidopsis tha... [more]
LBD15_ARATH4.133e-3769.90LOB domain-containing protein 15 OS=Arabidopsis th... [more]
LBD25_ARATH5.397e-3766.35LOB domain-containing protein 25 OS=Arabidopsis th... [more]
LBD1_ARATH1.202e-3667.96LOB domain-containing protein 1 OS=Arabidopsis tha... [more]
LBD6_ARATH3.499e-3666.99LOB domain-containing protein 6 OS=Arabidopsis tha... [more]
LBD11_ARATH5.968e-3666.99LOB domain-containing protein 11 OS=Arabidopsis th... [more]
LBD6_MAIZE2.962e-3547.24LOB domain-containing protein 6 OS=Zea mays GN=LBD... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185373 ID=CN185373; Name=CN185373; organism=Citrus sinensis; type=EST; length=621bp
ATGCTCTGTTGTATCTCTATAGCCATCTTCTCCTTCCTCCAAGCACTTTT
TTTATTTTTCTTTTTTCACAGAGGAAAATGGGTGGAAATTCTCCATGTGC
CTCTTGCAAGTTGCTGCGTCGCCGTTGCACCAAAGACTGCATCTTTGCTC
CTTACTTCCCTCCTGATGATCCCCACAAGTTTGCCATTGTTCATAAGGTC
TTTGGTGCTAGCAACGTTAGCAAAATGTTGCAGGAGCTTCCGGTGCATCA
AAGGGCAGATGCAGTGAGCAGTTTGGTTTATGAAGCAAACGCCAGAGTGA
GAGACCCAGTATATGGCTGTGTTGGTGCCATATCTTTTTTGCAAAACCAA
GTGTCTCAGCTGCAAATGCAACTGGCAGTGGCTGAAGCAGAGATATTGTG
CATCCAGATGCAGCAAGAACCGATGATGCCAACTCCACAAATAGACCCAG
ATGACAAGCCGTTTCTTCTCCAAAATAACCTCCCCCATCAATACCTCAAT
TTTACTTCATCTAGCAATAATGTAATTCATGACTCCCTCAAGAGAGAGAC
CATCTTTGGACATGACATGGTTTCTTAATTAAAATCTGCCCTCTGTACGT
TTTTCAAAAAAAAAAAAAAAA
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