CN185140

Overview
NameCN185140
Unique NameCN185140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12890 contig Csv1_Contig12890:25..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185140 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.601e-40
Identity = 79/152 (51.97%), Postives = 108/152 (71.05%), Query Frame = -3
Query:  337 KMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDN-GDYQSAMALANGASNLYAFRM---QQQNLHQGTG 780
            ++FDQYQK++GVDLWS+HY KMQE  +KL E+N  LR++IRQRMGE L+DL +E++  L ++M +S   +RERK+ VI  Q DT KKKVRN+EE H N++L+F+ + +DPH+GLVDN GDY S +   NG   + A R+       LH G G
Sbjct:   66 QLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEGDYNSVLGFPNGGPRIIALRLPTNHHPTLHSGGG 217          
BLAST of CN185140 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.355e-39
Identity = 82/159 (51.57%), Postives = 110/159 (69.18%), Query Frame = -3
Query:  319 KMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVD-NGDYQSAMALANGASNLYAFRMQ----QQNLHQGTGGYGSSD 780
            ++FD YQK++GVDLW++HY KMQE  RKLKE+N  LRK+IRQRMGE L+DL +E+L  L +N+ +S   +RERK+ VI  Q +T+KKKVRN+EE H N+LL+F+ + +DP YGLV+  GDY S +   NG   + A R+Q    Q N H      G SD
Sbjct:   66 QLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEFDARQEDP-YGLVEQEGDYNSVLGFPNGGHRILALRLQPNHHQPNHHHHLHSGGGSD 223          
BLAST of CN185140 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.454e-30
Identity = 69/146 (47.26%), Postives = 97/146 (66.44%), Query Frame = -3
Query:  349 MFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDN-GDYQSAMALANGASNLYAFRM--QQQNLH 777
            +FD+YQ+++G  LW   Y  MQ +   LK+IN  LR +IRQRMGEDLD L F+ELRGLEQN+ ++   VR RK+HVI TQT+TYKKKV++  E +  +  +   + ++P +G VDN G      A A  A++++AFR+   Q NLH
Sbjct:   67 IFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQELGLR-EEPAFGFVDNTGGGWDGGAGAGAAADMFAFRVVPSQPNLH 211          
BLAST of CN185140 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.976e-28
Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = -3
Query:  349 KMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDN-GDYQSAMALANGASNLYAFRMQQQNLH 780
            ++ D YQ    VD+W+T Y +MQE+ RKL E N  LR  I+QR+GE LD+L  +ELR LE  M ++   VRERKF  +  Q +T KKK ++ ++   N++ + E + +DPHYGLVDN GDY S +      S  YA R  Q + H
Sbjct:   66 EIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHYGLVDNGGDYDSVLGYQIEGSRAYALRFHQNHHH 210          
BLAST of CN185140 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.111e-28
Identity = 62/142 (43.66%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  376 KMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHY--GLVDNGDYQSAMALA-----NGASNLYA 780
            KM+D+YQK  GVDLW   + +MQE +RK+ E+N+ LR++I +RMG DL+ LT  EL  L+Q M  +   +R +K+H IK QT T +KK++NLEERH +++++ E K+  P +  G  D  +Y++A A A       A+NL+A
Sbjct:   66 KMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDLVMELEAKFRGPQFAIGEDDPRNYEAAAAAAVYGNDVAAANLFA 207          
The following BLAST results are available for this feature:
BLAST of CN185140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DEFA_ANTMA1.601e-4051.97Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MADS1_PETHY1.355e-3951.57Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD16_ORYSJ7.454e-3047.26MADS-box transcription factor 16 OS=Oryza sativa s... [more]
AP3_ARATH6.976e-2844.14Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
CMB2_DIACA9.111e-2843.66MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006N05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185140 ID=CN185140; Name=CN185140; organism=Citrus sinensis; type=EST; length=782bp
GAGGAAACACTCATATTATATATAATACAAACTTATTGTGAATATGTTTA
CACACATGGCAACCATAACACAAGAAAGAAGGCAGTGAGGAGGGCCCTTT
GTGTTTCATCATGGCTAATTATTAATTATCAAATTACACACCGCACAAAA
TACGTACGTACACAAATTGAGAATTGCAGCAAGTCTGTGCATCTCGAAAT
TATTTCTTTTGCCAACCTAATTCAGTAATAATGATAGCACACATTTAGAA
TTAATTTTGAAACCTGAAGAGATCGGTCGGTGTAATTAACCTCTCAAATG
CAATCAGGCAAGGGTAAGATCACTGGATCCATACCCCCCAGTCCCCTGGT
GAAGGTTTTGCTGTTGCATGCGAAATGCATACAGGTTAGACGCTCCATTT
GCTAATGCCATTGCGGATTGATAGTCTCCATTGTCAACTAATCCGTAATG
TGGATCGTCATATTTTGTTTCAAAGTCCAGCAGGATGTTTCCATGCCTTT
CCTCCAAGTTTCTTACCTTCTTCTTGTAGGTATCTGTCTGCGTTTTGATC
ACATGAAACTTTCTTTCACGAACGGTAGCCGCAGAAGAAGACATGTTTTG
CTCAAGACCACGCAGTTCTTCAAAGGTTAGATCATCCAAATCCTCTCCCA
TCCTCTGCCTGATGTCTTTCCTTAGCTTATTATTGATCTCTTTCAGTTTC
CTGTACGACTCTTGCATTTTCGCGTAGTGGGTGCTCCAGAGATCAACCCC
TAAACTCTTCTGGTATTGATCGAACATCTTCT
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