CN185052

Overview
NameCN185052
Unique NameCN185052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9387 contig Csv1_Contig9387:35..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185052 vs. ExPASy Swiss-Prot
Match: HDD1A_HUMAN (Haloacid dehalogenase-like hydrolase domain-containing protein 1A OS=Homo sapiens GN=HDHD1A PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.538e-44
Identity = 89/176 (50.57%), Postives = 122/176 (69.32%), Query Frame = 3
Query:   90 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAVEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQKILVFERCP 617
            +P+TH+IFDMDGLLLDTE+ Y+ V + I  RY+K + W +K+ +MGKKA+EAAQ+ ++   +   +S E+ + + +  L+ +FPT+ LMPGA  LI HL   GIP  +AT S +  F++KT +H+E FSL  H+V GDDPEV+ GKP PDIFLA AKRF   P   +K LVFE  P
Sbjct:    6 QPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLP--MSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPA-MEKCLVFEDAP 178          
BLAST of CN185052 vs. ExPASy Swiss-Prot
Match: HDD1A_MOUSE (Haloacid dehalogenase-like hydrolase domain-containing protein 1A OS=Mus musculus GN=Hdhd1a PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.365e-41
Identity = 84/176 (47.73%), Postives = 110/176 (62.50%), Query Frame = 3
Query:   90 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAVEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQKILVFERCP 617
            +P+T +IFD+DGL+L+TE  YT+V E I  RY K ++W +K+ +MGKKA+E AQ  VE   +   +S E+ L + +E LQ +  T+  MPGA  LI HL    +P  +AT S    F+ KT +H   F L HH+V GDDPEVK GKP  DIFL  AKRF   P D +  LVFE  P
Sbjct:   11 RPVTPLIFDLDGLILNTEDLYTDVFEEICNRYGKKYNWDVKSLVMGKKALETAQTIVEFLNLP--ISKEELLKESQEKLQMVLHTAGFMPGAEELIHHLKKHRLPFALATSSETVTFQTKTSRHTGFFGLFHHIVLGDDPEVKNGKPGMDIFLTCAKRFSPPP-DPKDCLVFEDSP 183          

HSP 2 Score: 30.4166 bits (67), Expect = 1.365e-41
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  607 KDAPSGVLAAKNAGMSVVMVPDPRLDS 687
            +D+P+GV AA + GM VVMVP   L +
Sbjct:  180 EDSPNGVEAAIHCGMQVVMVPHENLSA 206          
BLAST of CN185052 vs. ExPASy Swiss-Prot
Match: GS1_DROME (GS1-like protein OS=Drosophila melanogaster GN=Gs1l PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.434e-36
Identity = 84/177 (47.46%), Postives = 110/177 (62.15%), Query Frame = 3
Query:   90 KPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAVEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRG-DDPEVKQGKPSPDIFLAAAKRFEGGPIDSQKILVFERCP 617
            + +TH +FDMDGLLLDTE+ YT   E+IL  Y KT+ + +K ++MG +    A+  VE   +   +S E++  Q+    + L   ++LMPGA  L+RHLHA  +P C+AT S A   ELKT +HRELFSL +H V G  D EV  GKP+PDIFL AA RF G P      LVFE  P
Sbjct:    7 RKVTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQVMGLQTEPLARFMVEHYELP--MSWEEYARQQRANTEILMRNAQLMPGAERLLRHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNGKPAPDIFLVAAGRF-GVPPKPSDCLVFEDSP 180          
BLAST of CN185052 vs. ExPASy Swiss-Prot
Match: YJM7_SCHPO (Putative uncharacterized hydrolase C1020.07 OS=Schizosaccharomyces pombe GN=SPCC1020.07 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.000e-24
Identity = 62/155 (40.00%), Postives = 96/155 (61.94%), Query Frame = 3
Query:  108 IFDMDGLLLDTEKFYTEVQELILARYNK-TFDWSLKAKMMGKKAVEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH-HVVRGDDPE--VKQGKPSPDIFLAAAK 560
            +FDMDGLL+DTE  YT+   +IL RYNK  F   +KAKMMG+ + EA+++F++ +GI   L+ E+++  + ET   L+  ++ +PG  +L+  L +  IP+ +AT S   +FE K+     LF     +++ GDDP   V +GKP PDI+  A K
Sbjct:    7 LFDMDGLLVDTESIYTKSTNIILKRYNKGPFSMEVKAKMMGRTSKEASRIFLDWSGID--LTCEEYIALQRETQAELWRHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHLFDHFDGNIITGDDPRLPVGRGKPHPDIWFIALK 159          

HSP 2 Score: 25.7942 bits (55), Expect = 1.000e-24
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  598 SCL--KDAPSGVLAAKNAGMSVVMVPD 672
            +CL  +D+ +GV + + AGM VV VPD
Sbjct:  177 NCLVFEDSITGVQSGRAAGMKVVWVPD 203          
BLAST of CN185052 vs. ExPASy Swiss-Prot
Match: YDX1_SCHPO (Uncharacterized protein C4C5.01 OS=Schizosaccharomyces pombe GN=SPAC4C5.01 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 6.727e-19
Identity = 54/151 (35.76%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  108 IFDMDGLLLDTEKFYTEVQELILARYNK-TFDWSLKAKMMGKKAVEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLM-HHVVRGDDPEVK--QGKPSPDIFL 548
            +FDMDGLL+D+E  YT+   LIL RY K     S+KA+MMG+    AA+V ++ + I   ++ + F+ +++      + + + MPGA  LI +L   GI + +AT S   ++ +KT   + +F     +V+ GD+P +   +GKP PDI+L
Sbjct:   12 LFDMDGLLVDSETIYTKTTNLILDRYGKDPLPISVKAQMMGRPGSAAAKVVIDWSNI--PMTPQQFVDEQQVIRAKFWSSLKPMPGAESLINNLSNHGIDIGLATSSNTANYNMKTAHLKHIFEKFGKNVITGDNPSIAPGRGKPFPDIWL 160          

HSP 2 Score: 26.5646 bits (57), Expect = 6.727e-19
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  607 KDAPSGVLAAKNAGMSVVMVPD 672
            +D+  GV +AK AGM V+ VPD
Sbjct:  187 EDSIPGVKSAKAAGMHVIWVPD 208          
BLAST of CN185052 vs. ExPASy Swiss-Prot
Match: YKD3A_YEAST (Putative uncharacterized hydrolase YKL033W-A OS=Saccharomyces cerevisiae GN=YKL033W-A PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  108 IFDMDGLLLDTEKFYTEVQELILARYNK-TFDWSLKAKMMGKKAVEAAQVFVEETGISDKLSAEDFLVQREETLQTL-FPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVK--QGKPSPDIFLAAAK 560
            +FDMDGLL++TE  YTE     LA + K    W +K K+ G    EA +  +E   +   L   D   +R   LQ+L + T E +PGA +L+++L  K IP+ + T S    F  KT    E F L   +V GDDP +   +GKP PDI+    K
Sbjct:   11 LFDMDGLLINTEDIYTETLNETLAEFGKGPLTWDVKIKLQGLPGPEAGKRVIEHYKLPITLDEYD---ERNVALQSLKWGTCEFLPGALNLLKYLKLKNIPIALCTSSNKTKFRGKTSHLEEGFDLFDTIVTGDDPRIAKGRGKPFPDIWQLGLK 162          
BLAST of CN185052 vs. ExPASy Swiss-Prot
Match: P1254_THEMA (Phosphorylated carbohydrates phosphatase TM_1254 OS=Thermotoga maritima GN=TM_1254 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.030e-14
Identity = 56/171 (32.75%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  105 VIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAVEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELM---PGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQKILVFE 608
            VIFDMDG+L+DTE  Y E    +   Y K +   L  ++MG    E   + +E   I D L  E+F  +  E  + +F  SEL+   PG    +  + +K I + +AT +  R   L+  +  +L      +V GD  +VK GKP P+I+L   +R    P   +K++VFE
Sbjct:    4 VIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEIKDSL--ENFKKRVHEEKKRVF--SELLKENPGVREALEFVKSKRIKLALATSTPQRE-ALERLRRLDLEKYFDVMVFGD--QVKNGKPDPEIYLLVLERLNVVP---EKVVVFE 164          

HSP 2 Score: 22.3274 bits (46), Expect = 9.030e-14
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  583 IHKKFSCLKDAPSGVLAAKNAGM 651
            + +K    +D+ SGV AAK+AG+
Sbjct:  156 VPEKVVVFEDSKSGVEAAKSAGI 178          
The following BLAST results are available for this feature:
BLAST of CN185052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HDD1A_HUMAN1.538e-4450.57Haloacid dehalogenase-like hydrolase domain-contai... [more]
HDD1A_MOUSE1.365e-4147.73Haloacid dehalogenase-like hydrolase domain-contai... [more]
GS1_DROME3.434e-3647.46GS1-like protein OS=Drosophila melanogaster GN=Gs1... [more]
YJM7_SCHPO1.000e-2440.00Putative uncharacterized hydrolase C1020.07 OS=Sch... [more]
YDX1_SCHPO6.727e-1935.76Uncharacterized protein C4C5.01 OS=Schizosaccharom... [more]
YKD3A_YEAST4.217e-1837.42Putative uncharacterized hydrolase YKL033W-A OS=Sa... [more]
P1254_THEMA9.030e-1432.75Phosphorylated carbohydrates phosphatase TM_1254 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185052 ID=CN185052; Name=CN185052; organism=Citrus sinensis; type=EST; length=705bp
CTTTTTTGTGGTTTTTGTCCGCTTCTCATCAAATATTTATTTACGCAGAG
AACAAAACCCAAATCTGAATGGCGGCTGGTTCGAACAAGAAGCCAATCAC
TCACGTCATCTTCGACATGGACGGTCTCTTACTCGATACAGAGAAGTTCT
ATACTGAAGTTCAGGAACTCATACTTGCCAGATACAACAAAACTTTTGAT
TGGAGTCTTAAGGCAAAAATGATGGGGAAGAAAGCTGTAGAAGCTGCTCA
AGTCTTTGTTGAAGAGACTGGGATCAGTGACAAACTTTCGGCTGAGGACT
TTCTTGTACAAAGAGAAGAGACCCTGCAGACCTTGTTCCCAACGAGTGAG
CTCATGCCAGGGGCTAGCCATTTGATCAGACATCTCCACGCCAAAGGAAT
ACCAATGTGTGTGGCAACTGGTTCTCTCGCGCGTCATTTTGAATTGAAGA
CACAAAAACATCGTGAACTTTTCTCATTGATGCATCATGTTGTTCGTGGG
GACGATCCAGAAGTTAAACAAGGCAAGCCATCCCCAGACATATTCCTAGC
AGCTGCCAAAAGATTTGAGGGTGGGCCAATAGATTCACAAAAAATTCTCG
TGTTTGAAAGATGCCCCTTCAGGAGTACTTGCGGCTAAGAATGCTGGGAT
GTCTGTAGTAATGGTTCCAGATCCAAGGCTGGATAGCTCTTATCATTCTA
ATGCA
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